Gorai.004G180000 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.004G180000 T287544_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.886 0.936
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.886 0.936
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.761 0.809
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.761 0.809
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.761 0.809
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.761 0.809
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.761 0.809
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.761 0.809
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.761 0.809
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.714 0.745
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.711 0.809
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.711 0.809
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.711 0.809
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.711 0.809
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.708 0.723
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.708 0.723
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.708 0.723
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN

NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.683 0.702
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH

DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.683 0.702
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.678 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G180000.1 Myb 27 78
Gorai.004G180000.2 Myb 27 78
Gorai.004G180000.3 Myb 27 78

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

756 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02328 Aegilops tauschii F775_02328 I 0.000
anac047 Arabidopsis lyrata fgenesh2_kg.3__367__AT3G04070.1 I 0.000
NAC047 Arabidopsis thaliana AT3G04070 D 0.000
Bostr.2570s0301 Boechera stricta Bostr.2570s0301 I 0.000
BRADI1G17480 Brachypodium distachyon BRADI1G17480 I 0.000
Bo5g148420 Brassica oleracea Bo5g148420 I 0.000
Bo1g152220 Brassica oleracea Bo1g152220 I 0.000
Bra040152 Brassica rapa Bra040152 I 0.000
Bra031949 Brassica rapa Bra031949 I 0.000
PK06287.1 Cannabis sativa PK06287.1 N 0.000
Cagra.2026s0001 Capsella grandiflora Cagra.2026s0001 I 0.000
Carubv10014000m.g Capsella rubella Carubv10014000m.g I 0.000
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I 0.000
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I 0.000
Eucgr.K01471 Eucalyptus grandis Eucgr.K01471 N 0.000
Eucgr.B02485 Eucalyptus grandis Eucgr.B02485 I 0.000
Eucgr.A02070 Eucalyptus grandis Eucgr.A02070 I 0.000
Thhalv10021011m.g Eutrema salsugineum Thhalv10021011m.g I 0.000
Thhalv10012308m.g Eutrema salsugineum Thhalv10012308m.g I 0.000
GLYMA16G26740 Glycine max GLYMA16G26740 I 0.000
GLYMA02G07700 Glycine max GLYMA02G07700 I 0.000
GLYMA07G31220 Glycine max GLYMA07G31220 I 0.000
GLYMA16G04740 Glycine max GLYMA16G04740 I 0.000
GLYMA19G28476 Glycine max GLYMA19G28476 I 0.000
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I 0.000
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I 0.000
LPERR03G13950 Leersia perrieri LPERR03G13950 I 0.000
Lus10003269.g Linum usitatissimum Lus10003269.g I 0.000
Lus10006547.g Linum usitatissimum Lus10006547.g I 0.000
Lus10011215.g Linum usitatissimum Lus10011215.g I 0.000
Lus10018469.g Linum usitatissimum Lus10018469.g I 0.000
Lus10042531.g Linum usitatissimum Lus10042531.g I 0.000
chr1.CM0104.240.nc Lotus japonicus chr1.CM0104.240.nc I 0.000
MDP0000404409 Malus domestica MDP0000404409 I 0.000
MDP0000674514 Malus domestica MDP0000674514 I 0.000
MDP0000180683 Malus domestica MDP0000180683 I 0.000
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I 0.000
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I 0.000
OBART07G26600 Oryza barthii OBART07G26600 I 0.000
OB07G32110 Oryza brachyantha OB07G32110 I 0.000
ORGLA07G0209600 Oryza glaberrima ORGLA07G0209600 I 0.000
OGLUM07G26630 Oryza glumaepatula OGLUM07G26630 I 0.000
OGLUM07G26640 Oryza glumaepatula OGLUM07G26640 I 0.000
BGIOSGA026407 Oryza indica BGIOSGA026407 I 0.000
OLONG_012944 Oryza longistaminata OLONG_012944 I 0.000
OMERI07G23240 Oryza meridionalis OMERI07G23240 I 0.000
ONIVA07G26310 Oryza nivara ONIVA07G26310 I 0.000
ORUFI07G27590 Oryza rufipogon ORUFI07G27590 I 0.000
Pavir.Bb03737 Panicum virgatum Pavir.Bb03737 I 0.000
Pavir.J22666 Panicum virgatum Pavir.J22666 I 0.000
POPTR_0013s05080 Populus trichocarpa POPTR_0013s05080 I 0.000
POPTR_0019s04690 Populus trichocarpa POPTR_0019s04690 I 0.000
Pm025312 Prunus mume Pm025312 I 0.000
PRUPE_ppa007445mg Prunus persica PRUPE_ppa007445mg I 0.000
29950.m001173 Ricinus communis 29950.m001173 I 0.000
30078.m002348 Ricinus communis 30078.m002348 I 0.000
SapurV1A.1196s0040 Salix purpurea SapurV1A.1196s0040 I 0.000
SapurV1A.0867s0160 Salix purpurea SapurV1A.0867s0160 I 0.000
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I 0.000
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I 0.000
Si030267m.g Setaria italica Si030267m.g I 0.000
TCM_026030 Theobroma cacao TCM_026030 I 0.000
Traes_2BS_924D34AA1 Triticum aestivum Traes_2BS_924D34AA1 I 0.000
Traes_2BS_C116E5668 Triticum aestivum Traes_2BS_C116E5668 I 0.000
anac025 Vitis vinifera VIT_00s0375g00040 I 0.000
GRMZM2G430849 Zea mays GRMZM2G430849 I 0.000
GRMZM2G042494 Zea mays GRMZM2G042494 I 0.000