CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.005G212900
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.005G212900
T287575_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN
NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.735
0.846
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.735
0.846
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.735
0.846
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G212900.1
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.005G212900.2
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.005G212900.3
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy