CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.006G162800
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.006G162800
T287596_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAX3
M02700_2.00
Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS
SELEX
Mathelier et al.(2014)
MA0576.1
0.784
0.828
RAX3
M11043_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB84_01
0.784
0.828
MYB80
M07142_2.00
Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MS188_col_a
0.661
0.667
MYB80
M07143_2.00
Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR
Dap-seq
OMalley et al.(2016)
MS188_colamp_a
0.661
0.667
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.006G162800.1
Myb
14
62
KGPWSPEEDAKLKEYIQQHGTGGNWIALPQKAGLKRCGKSCRLRWLNYL
Gorai.006G162800.1
Myb
68
113
HGEFSDDEDRIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKL
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
515 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BOTBODRAFT_155106
Botryobasidium botryosum
BOTBODRAFT_155106
N
0.000
CERSUDRAFT_82708
Ceriporiopsis subvermispora
CERSUDRAFT_82708
N
0.000
CC1G_01048
Coprinopsis cinerea
CC1G_01048
N
0.000
FIBRA_08487
Fibroporia radiculosa
FIBRA_08487
N
0.000
FOMPIDRAFT_1025229
Fomitopsis pinicola
FOMPIDRAFT_1025229
N
0.000
Z517_03415
Fonsecaea pedrosoi
Z517_03415
N
0.000
GALMADRAFT_269832
Galerina marginata
GALMADRAFT_269832
N
0.000
M413DRAFT_15049
Hebeloma cylindrosporum
M413DRAFT_15049
N
0.000
estExt_Genewise1.C_20637
Heterobasidion annosum
estExt_Genewise1.C_20637
N
0.000
HETIRDRAFT_432523
Heterobasidion irregulare
HETIRDRAFT_432523
N
0.000
JAAARDRAFT_31927
Jaapia argillacea
JAAARDRAFT_31927
N
0.000
LACBIDRAFT_305811
Laccaria bicolor
LACBIDRAFT_305811
N
0.000
E5Q_03246
Mixia osmundae
E5Q_03246
N
0.000
Moror_825
Moniliophthora roreri
Moror_825
N
0.000
PAXRUDRAFT_821096
Paxillus rubicundulus
PAXRUDRAFT_821096
N
0.000
PHACADRAFT_255607
Phanerochaete carnosa
PHACADRAFT_255607
N
0.000
fgenesh1_pg.C_scaffold_1000144
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_1000144
N
0.000
PHLGIDRAFT_82021
Phlebiopsis gigantea
PHLGIDRAFT_82021
N
0.000
PILCRDRAFT_823319
Piloderma croceum
PILCRDRAFT_823319
N
0.000
PISMIDRAFT_670105
Pisolithus microcarpus
PISMIDRAFT_670105
N
0.000
PLEOSDRAFT_1110570
Pleurotus ostreatus
PLEOSDRAFT_1110570
N
0.000
PAN0_024c6129
Pseudozyma antarctica
PAN0_024c6129
N
0.000
PaG_00960
Pseudozyma aphidis
PaG_00960
N
0.000
PSEUBRA_SCAF13g01932
Pseudozyma brasiliensis
PSEUBRA_SCAF13g01932
N
0.000
PFL1_03819
Pseudozyma flocculosa
PFL1_03819
N
0.000
PHSY_007464
Pseudozyma hubeiensis
PHSY_007464
N
0.000
SCHCODRAFT_74719
Schizophyllum commune
SCHCODRAFT_74719
N
0.000
SCLCIDRAFT_15041
Scleroderma citrinum
SCLCIDRAFT_15041
N
0.000
M422DRAFT_71920
Sphaerobolus stellatus
M422DRAFT_71920
N
0.000
M422DRAFT_180219
Sphaerobolus stellatus
M422DRAFT_180219
N
0.000
sr15132
Sporisorium reilianum
sr15132
N
0.000
CY34DRAFT_800522
Suillus luteus
CY34DRAFT_800522
N
0.000
BN946_scf185014.g25
Trametes cinnabarina
BN946_scf185014.g25
N
0.000
UHOR_06369
Ustilago hordei
UHOR_06369
N
0.000
UM04242
Ustilago maydis
UM04242
N
0.000