Gorai.006G172800 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.006G172800 T287598_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR

YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.789 0.906
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.697 0.791
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN

NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.694 0.799
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN

NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.687 0.748
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR

YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.687 0.748
Q948S6_TOBAC
M11075_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA1_01
0.665 0.748
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G172800.1 Myb 59 105
Gorai.006G172800.1 Myb 111 157
Gorai.006G172800.1 Myb 163 207
Gorai.006G172800.2 Myb 59 105
Gorai.006G172800.2 Myb 111 157
Gorai.006G172800.2 Myb 163 207

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.887
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.887
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.883
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.881
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.880
Pm002704 Prunus mume Pm002704 I 0.880
TCM_021936 Theobroma cacao TCM_021936 I 0.860
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.860
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.858
29846.m000184 Ricinus communis 29846.m000184 I 0.849
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.849
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.848
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.846
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.841
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.841
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.837
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.837
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.830
MDP0000219581 Malus domestica MDP0000219581 I 0.830
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.828
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.828
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.828
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.827
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.827
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.827
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.827
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.826
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.826
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.824
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.824
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.822
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.822
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.821
Bo1g144510 Brassica oleracea Bo1g144510 I 0.818
Bra034067 Brassica rapa Bra034067 I 0.818
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.807
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.807
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.806
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.806
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.802
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.796
mgf019610m Mimulus guttatus mgf019610m I 0.794
PK11664.1 Cannabis sativa PK11664.1 I 0.792
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.792
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.791
Si000842m.g Setaria italica Si000842m.g I 0.791
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.791
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.789
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.789
Bo5g139340 Brassica oleracea Bo5g139340 I 0.786
Bra029762 Brassica rapa Bra029762 I 0.785
Cla018173 Citrullus lanatus Cla018173 I 0.784
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.783
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.783
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.778
MYB3R-2 Oryza sativa OS01G0841500 I 0.778
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.778
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.765
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.759
Bra009597 Brassica rapa Bra009597 I 0.755
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.755
Bo9g184660 Brassica oleracea Bo9g184660 I 0.746
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.742
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.731
Ca_21127 Cicer arietinum Ca_21127 I 0.728
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.726
Ca_14925 Cicer arietinum Ca_14925 I 0.725
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.725
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.718
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.718
Cla023357 Citrullus lanatus Cla023357 I 0.715
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.715
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.714
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.713
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.711
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.709
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.709
MDP0000179225 Malus domestica MDP0000179225 I 0.709
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.708
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.708
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.708
Cla022565 Citrullus lanatus Cla022565 I 0.708
Bo3g062020 Brassica oleracea Bo3g062020 N 0.707
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.706
TCM_047091 Theobroma cacao TCM_047091 I 0.706
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.706
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.706
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.705
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.704
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.703
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.700
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.700
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.699
OB12G16480 Oryza brachyantha OB12G16480 I 0.699
OS12G0238000 Oryza sativa OS12G0238000 I 0.699
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.697
OB01G45570 Oryza brachyantha OB01G45570 I 0.697
PK12011.1 Cannabis sativa PK12011.1 D 0.694
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.694
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.693
Bo1g010040 Brassica oleracea Bo1g010040 I 0.693
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.693
29794.m003447 Ricinus communis 29794.m003447 I 0.693
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.691
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.690
MDP0000295807 Malus domestica MDP0000295807 I 0.689
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.688
OB01G18340 Oryza brachyantha OB01G18340 I 0.688
Bra011376 Brassica rapa Bra011376 I 0.688
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.688
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.687
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.687
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.687
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.687
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.686
Bo3g171130 Brassica oleracea Bo3g171130 I 0.686
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.686
Bra034531 Brassica rapa Bra034531 I 0.686
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.686
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.686
OBART05G19200 Oryza barthii OBART05G19200 I 0.686
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.686
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.686
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.686
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.685
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.684
Pm005124 Prunus mume Pm005124 I 0.682
Bra001311 Brassica rapa Bra001311 N 0.680
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.680
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.679
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.678
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.678
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.678
Bo7g115810 Brassica oleracea Bo7g115810 I 0.676
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.676
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.675
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.675
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.674
F775_12121 Aegilops tauschii F775_12121 N 0.674
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.673
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.672
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.672
OBART01G08110 Oryza barthii OBART01G08110 I 0.672
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.672
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.672
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.671
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.671
Ca_01884 Cicer arietinum Ca_01884 I 0.671
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.669
Si021484m.g Setaria italica Si021484m.g I 0.669
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.669
Lus10022136.g Linum usitatissimum Lus10022136.g I 0.668
F775_05724 Aegilops tauschii F775_05724 I 0.666
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.666
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.665
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.665
mgf008601m Mimulus guttatus mgf008601m I 0.665
OS05G0459000 Oryza sativa OS05G0459000 I 0.664
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.664
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.662