Gorai.006G172800 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.006G172800 T287598_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR

YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.789 0.906
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.697 0.791
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN

NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.694 0.799
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN

NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.687 0.748
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR

YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.687 0.748
Q948S6_TOBAC
M11075_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA1_01
0.665 0.748
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G172800.1 Myb 59 105
Gorai.006G172800.1 Myb 111 157
Gorai.006G172800.1 Myb 163 207
Gorai.006G172800.2 Myb 59 105
Gorai.006G172800.2 Myb 111 157
Gorai.006G172800.2 Myb 163 207

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

Invalid Input OrderBy

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action