Gorai.006G179700 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.006G179700 T287600_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.781 0.892
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN

NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.706 0.753
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH

DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.696 0.796
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.664 0.763
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY

RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.664 0.763
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN

NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.664 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G179700.1 Myb 53 99
Gorai.006G179700.1 Myb 105 150

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_021796 Theobroma cacao TCM_021796 I 0.891
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.881
Cla018417 Citrullus lanatus Cla018417 I 0.881
27798.m000612 Ricinus communis 27798.m000612 I 0.862
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.856
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.855
Pm002576 Prunus mume Pm002576 I 0.850
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.841
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.840
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.840
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.840
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.838
MDP0000319124 Malus domestica MDP0000319124 I 0.832
MDP0000203733 Malus domestica MDP0000203733 I 0.832
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.832
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.828
mgf015566m Mimulus guttatus mgf015566m I 0.821
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.821
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.821
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.817
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.817
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.815
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.812
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.810
TCM_042629 Theobroma cacao TCM_042629 I 0.806
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.806
PK12959.1 Cannabis sativa PK12959.1 I 0.803
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.802
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.802
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.798
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.795
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.795
mgf018580m Mimulus guttatus mgf018580m I 0.789
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.789
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.783
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.783
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.782
MDP0000478512 Malus domestica MDP0000478512 I 0.782
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.782
PK07741.1 Cannabis sativa PK07741.1 D 0.781
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.781
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.781
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.779
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.779
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.779
MYB109 Arabidopsis thaliana AT3G55730 I 0.776
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.773
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.773
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.773
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.771
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.770
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.770
Pm018862 Prunus mume Pm018862 I 0.770
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.769
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.769
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.762
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.761
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.760
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.759
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.757
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.757
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.757
Bra007186 Brassica rapa Bra007186 I 0.757
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.749
Bo8g090160 Brassica oleracea Bo8g090160 I 0.748
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.747
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.747
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.746
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.745
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.745
Si001686m.g Setaria italica Si001686m.g I 0.743
MDP0000284922 Malus domestica MDP0000284922 I 0.742
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.737
Bra005006 Brassica rapa Bra005006 I 0.736
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.736
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.735
GLYMA02G43280 Glycine max GLYMA02G43280 I 0.735
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.735
GLYMA14G06320 Glycine max GLYMA14G06320 I 0.735
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.735
Bo4g025810 Brassica oleracea Bo4g025810 I 0.731
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.728
MYB25 Arabidopsis thaliana AT2G39880 I 0.727
MDP0000807341 Malus domestica MDP0000807341 I 0.726
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.724
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I 0.722
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.721
OB01G46120 Oryza brachyantha OB01G46120 I 0.719
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.716
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.712
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.708
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.708
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.708
MTR_3g101290 Medicago truncatula MTR_3g101290 I 0.707
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.706
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.706
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.706
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.706
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.706
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.706
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.706
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.706
OS02G0187700 Oryza sativa OS02G0187700 D 0.706
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.706
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.706
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.706
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.706
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.706
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.706
Si017917m.g Setaria italica Si017917m.g I 0.706
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.705
Bo3g062160 Brassica oleracea Bo3g062160 I 0.704
Cla022889 Citrullus lanatus Cla022889 I 0.704
Cucsa.232630 Cucumis sativus Cucsa.232630 I 0.704
PK29071.1 Cannabis sativa PK29071.1 I 0.704
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.701
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.700
TCM_033907 Theobroma cacao TCM_033907 I 0.700
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.700
mgf006151m Mimulus guttatus mgf006151m I 0.700
29814.m000736 Ricinus communis 29814.m000736 I 0.698
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.698
MYB1 Arabidopsis thaliana AT3G09230 D 0.696
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.695
Si032789m.g Setaria italica Si032789m.g I 0.695
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.695
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.695
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.694
PK16550.1 Cannabis sativa PK16550.1 I 0.694
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.693
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.692
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.692
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.692
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.692
Cla004431 Citrullus lanatus Cla004431 I 0.692
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.691
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.691
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.691
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.691
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.691
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.691
OS09G0106700 Oryza sativa OS09G0106700 I 0.691
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.691
mgf020432m Mimulus guttatus mgf020432m I 0.691
OBART09G00310 Oryza barthii OBART09G00310 I 0.691
OB09G10200 Oryza brachyantha OB09G10200 I 0.691
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.691
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.691
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.691
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.691
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.691
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.690
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.690
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.689
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.689
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.689
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.689
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.689
OBART01G37390 Oryza barthii OBART01G37390 I 0.689
OS01G0850400 Oryza sativa OS01G0850400 I 0.689
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.689
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.689
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.689
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.688
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.688
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.688
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.687
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.687
PK01153.1 Cannabis sativa PK01153.1 I 0.687
Bra032176 Brassica rapa Bra032176 I 0.685
29801.m003096 Ricinus communis 29801.m003096 I 0.684
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.684
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.683
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.679
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.678
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.678
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.676
mgf003084m Mimulus guttatus mgf003084m I 0.675
Cla013306 Citrullus lanatus Cla013306 I 0.674
mgf025567m Mimulus guttatus mgf025567m I 0.672
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.671
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.670
Pm021211 Prunus mume Pm021211 I 0.670
mgf002573m Mimulus guttatus mgf002573m I 0.670
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.669
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.668
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.668
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.668
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.668
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.667
Ca_12468 Cicer arietinum Ca_12468 I 0.666
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.665
Bra034057 Brassica rapa Bra034057 I 0.665
PK28565.1 Cannabis sativa PK28565.1 D 0.664
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.664
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.664
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.664
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.664
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.664
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.664
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.664
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.664
29970.m000987 Ricinus communis 29970.m000987 I 0.664
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.664
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.664
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.664
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.664
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.664
MDP0000232454 Malus domestica MDP0000232454 I 0.664
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.664
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.664
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.664
MDP0000196986 Malus domestica MDP0000196986 I 0.664
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.664
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.664
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.664
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.664
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.664
TCM_000696 Theobroma cacao TCM_000696 I 0.664
Si006938m.g Setaria italica Si006938m.g I 0.663
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.663
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.663
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.663
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.663
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.663
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.663
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.662
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.662
Ca_01522 Cicer arietinum Ca_01522 I 0.662
Bo7g118450 Brassica oleracea Bo7g118450 I 0.662
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.661
Cla014191 Citrullus lanatus Cla014191 I 0.661
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.661