CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.006G195700
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.006G195700
T287606_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.753
0.849
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.738
0.806
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.738
0.806
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.719
0.796
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.006G195700.1
Myb
25
72
KGPWTAEEDKKLVNFMRTHGYYCWRAVPKLAGLRRCGKSCRLRWTNYL
Gorai.006G195700.1
Myb
78
123
RGLLNHDEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHI
Gorai.006G195700.2
Myb
25
72
KGPWTAEEDKKLVNFMRTHGYYCWRAVPKLAGLRRCGKSCRLRWTNYL
Gorai.006G195700.2
Myb
78
123
RGLLNHDEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHI
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
320 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy