Gorai.007G002200 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.007G002200 T287613_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.834 0.892
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.834 0.892
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.755 0.806
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.755 0.806
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.716 0.742
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.716 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G002200.1 Myb 18 64
Gorai.007G002200.1 Myb 70 115
Gorai.007G002200.2 Myb 4 50
Gorai.007G002200.2 Myb 56 101
Gorai.007G002200.3 Myb 18 64
Gorai.007G002200.3 Myb 70 115

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

379 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000009090 Ailuropoda melanoleuca ENSAMEG00000009090 I 0.000
ENSP00000300870-D85 Bos grunniens ENSP00000300870-D85 I 0.000
ZNF354A Bos taurus ENSBTAG00000006428 I 0.000
ZNF354A Callithrix jacchus ENSCJAG00000012077 I 0.000
ZNF354B Callithrix jacchus ENSCJAG00000018848 I 0.000
ZNF354B Canis familiaris ENSCAFG00000029114 I 0.000
ZNF354A Canis familiaris ENSCAFG00000031000 I 0.000
ZNF354B Cavia porcellus ENSCPOG00000002227 I 0.000
ENSCSAG00000008589 Chlorocebus sabaeus ENSCSAG00000008589 I 0.000
ENSCSAG00000008583 Chlorocebus sabaeus ENSCSAG00000008583 I 0.000
ZNF354B Dasypus novemcinctus ENSDNOG00000031129 I 0.000
ENSDNOG00000043806 Dasypus novemcinctus ENSDNOG00000043806 I 0.000
Zfp354a Dipodomys ordii ENSDORG00000009396 I 0.000
ZNF354A Equus caballus ENSECAG00000012431 I 0.000
ZNF354B Equus caballus ENSECAG00000012028 I 0.000
ENSEEUG00000008362 Erinaceus europaeus ENSEEUG00000008362 I 0.000
ZNF354B Felis catus ENSFCAG00000022066 I 0.000
ZNF354A Felis catus ENSFCAG00000023911 I 0.000
ZNF354A Gorilla gorilla ENSGGOG00000002534 I 0.000
ZNF354B Gorilla gorilla ENSGGOG00000000628 I 0.000
ZNF354B Homo sapiens ENSG00000178338 D 0.000
ZNF354A Homo sapiens ENSG00000169131 D 0.000
ENSSTOG00000024118 Ictidomys tridecemlineatus ENSSTOG00000024118 I 0.000
ZNF354A Loxodonta africana ENSLAFG00000002909 I 0.000
ENSP00000327143 Macaca fascicularis ENSP00000327143 I 0.000
ZNF354B Macaca mulatta ENSMMUG00000008976 I 0.000
ENSMMUG00000008975 Macaca mulatta ENSMMUG00000008975 I 0.000
ZNF354A Microcebus murinus ENSMICG00000006390 I 0.000
ENSMPUG00000000728 Mustela putorius furo ENSMPUG00000000728 I 0.000
ENSMPUG00000000732 Mustela putorius furo ENSMPUG00000000732 I 0.000
Zfp354a Mus musculus ENSMUSG00000020364 I 0.000
Myotis_brandtii_ZNF354A_10002378 Myotis brandtii Myotis_brandtii_ZNF354A_10002378 I 0.000
ZNF354A Myotis lucifugus ENSMLUG00000013294 I 0.000
ENSNLEG00000001410 Nomascus leucogenys ENSNLEG00000001410 I 0.000
ENSNLEG00000001411 Nomascus leucogenys ENSNLEG00000001411 I 0.000
ZNF354A Ochotona princeps ENSOPRG00000017155 I 0.000
ENSOCUG00000029238 Oryctolagus cuniculus ENSOCUG00000029238 I 0.000
ZNF354A Otolemur garnettii ENSOGAG00000024624 I 0.000
ENSOARG00000006794 Ovis aries ENSOARG00000006794 I 0.000
ZNF354A Pan troglodytes ENSPTRG00000017606 I 0.000
ZNF354B Pan troglodytes ENSPTRG00000017609 I 0.000
ENSPANG00000013252 Papio anubis ENSPANG00000013252 I 0.000
ENSPANG00000013855 Papio anubis ENSPANG00000013855 I 0.000
ENSPPYG00000016113 Pongo abelii ENSPPYG00000016113 I 0.000
ENSPPYG00000016111 Pongo abelii ENSPPYG00000016111 I 0.000
ZNF354A Pteropus vampyrus ENSPVAG00000016750 I 0.000
Zfp354a Rattus norvegicus ENSRNOG00000003634 I 0.000
ZNF354A Tursiops truncatus ENSTTRG00000010631 I 0.000