Gorai.007G312400 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.007G312400 T287649_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH

DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.750 0.839
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN

NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.750 0.839
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.714 0.796
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW

WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.713 0.806
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW

WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.713 0.806
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH

DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.713 0.806
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC

GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.700 0.806
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM

KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.700 0.806
GAM1_ORYSI
M11055_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.683 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G312400.1 Myb 43 90
Gorai.007G312400.1 Myb 96 141

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.795
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.789
TCM_030853 Theobroma cacao TCM_030853 I 0.789
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.781
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.767
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.767
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.767
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.767
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.767
TCM_011907 Theobroma cacao TCM_011907 I 0.758
29823.m000215 Ricinus communis 29823.m000215 I 0.757
MDP0000308617 Malus domestica MDP0000308617 I 0.756
Bra021791 Brassica rapa Bra021791 I 0.750
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.750
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.750
MYB101 Arabidopsis thaliana AT2G32460 D 0.750
Bo3g026690 Brassica oleracea Bo3g026690 I 0.750
MDP0000175835 Malus domestica MDP0000175835 I 0.749
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.745
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.742
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.741
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.741
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.741
Bo4g178040 Brassica oleracea Bo4g178040 I 0.740
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.739
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.739
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.738
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.736
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.736
Bra022888 Brassica rapa Bra022888 I 0.735
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.734
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.731
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.731
Pm015094 Prunus mume Pm015094 I 0.731
MDP0000179306 Malus domestica MDP0000179306 I 0.728
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.726
MDP0000176798 Malus domestica MDP0000176798 I 0.726
MDP0000151688 Malus domestica MDP0000151688 I 0.726
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.723
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.723
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.723
Cla005406 Citrullus lanatus Cla005406 I 0.722
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.717
Cla007782 Citrullus lanatus Cla007782 I 0.717
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.714
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.713
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.713
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.713
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.713
Ca_07119 Cicer arietinum Ca_07119 I 0.707
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.706
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.705
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.704
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.704
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.702
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.702
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.702
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.700
Gam1 Hordeum vulgare Q96464_HORVU D 0.700
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.700
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.700
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.700
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.700
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.700
F775_28392 Aegilops tauschii F775_28392 I 0.700
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.700
Si000907m.g Setaria italica Si000907m.g I 0.700
mgf002965m Mimulus guttatus mgf002965m I 0.698
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.697
Bra005597 Brassica rapa Bra005597 I 0.696
Bo4g046000 Brassica oleracea Bo4g046000 I 0.696
TCM_041010 Theobroma cacao TCM_041010 I 0.695
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.695
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.695
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.695
Bra035547 Brassica rapa Bra035547 I 0.694
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.694
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.694
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.692
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.692
Ca_25013 Cicer arietinum Ca_25013 I 0.691
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.690
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.690
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.690
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.690
Bra002938 Brassica rapa Bra002938 I 0.688
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.688
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.688
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.688
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.688
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.688
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.688
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.686
Pm016605 Prunus mume Pm016605 I 0.683
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.683
OB01G43550 Oryza brachyantha OB01G43550 I 0.683
OBART01G34660 Oryza barthii OBART01G34660 I 0.683
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.683
Bo9g119060 Brassica oleracea Bo9g119060 I 0.683
GAM1 Oryza indica BGIOSGA004670 I 0.683
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.683
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.683
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.683
GAMYB Oryza sativa OS01G0812000 I 0.683
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.683
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.683
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.683
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.682
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.682
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.682
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.682
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.680
PK17293.1 Cannabis sativa PK17293.1 I 0.680
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.679
VIT_07s0005g01210 Vitis vinifera VIT_07s0005g01210 I 0.679
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.677
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.676
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.676
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I 0.675
Bra015029 Brassica rapa Bra015029 I 0.675
AtMYB79 Arabidopsis thaliana AT4G13480 I 0.675
mgf025568m Mimulus guttatus mgf025568m I 0.675
Bo7g033260 Brassica oleracea Bo7g033260 I 0.675
Cagra.15509s0001 Capsella grandiflora Cagra.15509s0001 I 0.674
Carubv10007255m.g Capsella rubella Carubv10007255m.g I 0.674
MDP0000147309 Malus domestica MDP0000147309 I 0.674
Ca_21739 Cicer arietinum Ca_21739 I 0.674
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.674
Pavir.Ia04415 Panicum virgatum Pavir.Ia04415 I 0.673
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.673
ORUFI03G03040 Oryza rufipogon ORUFI03G03040 I 0.673
ORGLA03G0030900 Oryza glaberrima ORGLA03G0030900 I 0.673
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.673
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.673
OS03G0142600 Oryza sativa OS03G0142600 I 0.673
Sb01g047450 Sorghum bicolor Sb01g047450 I 0.673
OS03G0578900 Oryza sativa OS03G0578900 I 0.673
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.673
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.673
MLOC_9927 Hordeum vulgare MLOC_9927 I 0.673
GRMZM2G054111 Zea mays GRMZM2G054111 I 0.673
BGIOSGA011479 Oryza indica BGIOSGA011479 I 0.673
OB03G13340 Oryza brachyantha OB03G13340 I 0.673
OBART03G24120 Oryza barthii OBART03G24120 I 0.673
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.673
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.673
Si037281m.g Setaria italica Si037281m.g I 0.673
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.673
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.673
Si003965m.g Setaria italica Si003965m.g I 0.672
Thhalv10001498m.g Eutrema salsugineum Thhalv10001498m.g I 0.672
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.672
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.672
mgf020500m Mimulus guttatus mgf020500m I 0.672
Bo1g098860 Brassica oleracea Bo1g098860 I 0.671
Bo3g083130 Brassica oleracea Bo3g083130 I 0.671
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.671
Bostr.2021s0106 Boechera stricta Bostr.2021s0106 I 0.671
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.671
mgf004640m Mimulus guttatus mgf004640m I 0.671
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.671
Bra001941 Brassica rapa Bra001941 I 0.671
MYB305 Arabidopsis thaliana AT3G24310 I 0.671
Bra028369 Brassica rapa Bra028369 I 0.671
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.671
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.669
gene02324-v1.0-hybrid Fragaria vesca gene02324-v1.0-hybrid I 0.669
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.669
Pavir.Ib00221 Panicum virgatum Pavir.Ib00221 I 0.669
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.669
29785.m000932 Ricinus communis 29785.m000932 I 0.669
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.667
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.667
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.666
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.666
TCM_044611 Theobroma cacao TCM_044611 I 0.666
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.666
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.666
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.666
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.666
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.666
29686.m000890 Ricinus communis 29686.m000890 I 0.666
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.666
Pm011812 Prunus mume Pm011812 I 0.663
Bo7g088650 Brassica oleracea Bo7g088650 I 0.662
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I 0.662
Thhalv10006080m.g Eutrema salsugineum Thhalv10006080m.g I 0.662
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.662
AC217264.3_FG005 Zea mays AC217264.3_FG005 I 0.662
Sb01g015920 Sorghum bicolor Sb01g015920 I 0.662
ATMYB11 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002710 I 0.662
GRMZM2G070523 Zea mays GRMZM2G070523 I 0.662
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.662
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.662
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.661
Aquca_028_00141 Aquilegia coerulea Aquca_028_00141 I 0.661