CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.008G147400
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.008G147400
T287672_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN
NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.857
0.889
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN
NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.724
0.835
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN
NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.838
0.867
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.724
0.835
AT3G16350
M01078_2.00
Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN
PBM
Sullivan et al.(2014)
pTH7149
0.836
0.822
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.724
0.835
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD
HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.827
0.844
PK29550.1
M02358_2.00
Cannabis sativa
NNHDATCYNN
NNRGATHDNN
PBM
Weirauch et al.(2014)
pTH9595
0.826
0.800
0600010132
M02360_2.00
Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN
PBM
Weirauch et al.(2014)
pTH9441
0.803
0.822
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.798
0.844
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.798
0.844
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.798
0.844
PK00738.1
M02346_2.00
Cannabis sativa
NYWATCYDNN
NNHRGATWRN
PBM
Weirauch et al.(2014)
pTH9487
0.777
0.800
AT5G61620
M07149_2.00
Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
AT5G61620_col_a
0.771
0.778
AT5G61620
M07150_2.00
Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR
Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a
0.771
0.778
AT1G19000
M02287_2.00
Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN
PBM
Weirauch et al.(2014)
pTH7120
0.765
0.778
AT1G19000
M07012_2.00
Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD
Dap-seq
OMalley et al.(2016)
At1g19000_col_a
0.765
0.778
AT1G19000
M07013_2.00
Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW
Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a
0.765
0.778
AT3G10580
M07072_2.00
Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT
Dap-seq
OMalley et al.(2016)
AT3G10580_col_a
0.748
0.733
AT3G10580
M07073_2.00
Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG
Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a
0.748
0.733
AT5G56840
M07144_2.00
Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW
Dap-seq
OMalley et al.(2016)
AT5G56840_col_a
0.747
0.800
AT5G56840
M07145_2.00
Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD
Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a
0.747
0.800
AT1G74840
M02291_2.00
Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN
PBM
Weirauch et al.(2014)
pTH7074
0.718
0.800
AT1G74840
M07037_2.00
Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD
Dap-seq
OMalley et al.(2016)
At1g74840_col100_a
0.718
0.800
AT1G74840
M07038_2.00
Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD
Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a
0.718
0.800
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G147400.1
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.008G147400.2
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.008G147400.3
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.008G147400.4
Myb
85
130
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.008G147400.5
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.008G147400.6
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.008G147400.7
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Gorai.008G147400.8
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
668 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy