CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.008G158000
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.008G158000
T287676_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.688
0.817
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.688
0.817
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G158000.1
Myb
13
54
KGPWTTEEDTLLTRYIGRHGVGPWNMLAKCAGTNTLINNLFT
Gorai.008G158000.1
Myb
61
85
VDLPLTSSGLKRSGKSCRLRWLNYL
Gorai.008G158000.1
Myb
91
136
RGNLTLQEQQLILQLHSLWGNRWSKIAEHLPGRTDNEIKNYWRTRV
Gorai.008G158000.2
Myb
13
60
KGPWTTEEDTLLTRYIGRHGVGPWNMLAKCAGLKRSGKSCRLRWLNYL
Gorai.008G158000.2
Myb
66
111
RGNLTLQEQQLILQLHSLWGNRWSKIAEHLPGRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy