CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.008G287100
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.008G287100
T287691_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.775
0.817
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.775
0.817
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.736
0.806
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.730
0.763
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.730
0.763
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT
ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.698
0.742
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.698
0.742
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY
RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.698
0.742
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.696
0.774
MYB24
M02311_2.00
Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY
PBM
Weirauch et al.(2014)
pTH8662
0.679
0.763
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.672
0.656
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G287100.1
Myb
33
80
RGPWTIEEDSVLVHYIARHGEGRWNFLAKHAGLRRTGKSCRLRWLNYL
Gorai.008G287100.1
Myb
86
131
RGNLTAEEQFLILELHSKLGNRWSKIAQHLPGRTDNEIKNYWRTRV
Gorai.008G287100.2
Myb
33
80
RGPWTIEEDSVLVHYIARHGEGRWNFLAKHAGLRRTGKSCRLRWLNYL
Gorai.008G287100.2
Myb
86
131
RGNLTAEEQFLILELHSKLGNRWSKIAQHLPGRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
499 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy