Gorai.009G413600 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.009G413600 T287732_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN

NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.701 0.674
MYB27
M07097_2.00
Arabidopsis thaliana
HHTACCTAAYTTWWN

NWWAARTTAGGTADD
Dap-seq
OMalley et al.(2016)
MYB27_col_a
0.690 0.728
MYB27
M07098_2.00
Arabidopsis thaliana
NYHTACCTAAYTTWHN

NDWAARTTAGGTADRN
Dap-seq
OMalley et al.(2016)
MYB27_colamp_a
0.690 0.728
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G413600.1 Myb 17 64
Gorai.009G413600.1 Myb 71 115
Gorai.009G413600.2 Myb 17 64
Gorai.009G413600.2 Myb 71 115

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB27 Arabidopsis thaliana AT3G53200 D 0.690
MYB59 Arabidopsis thaliana AT5G59780 D 0.701
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.674
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.704
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.704
mgf004640m Mimulus guttatus mgf004640m I 0.689
mgf020363m Mimulus guttatus mgf020363m I 0.685
mgf025691m Mimulus guttatus mgf025691m I 0.685
Aquca_030_00038 Aquilegia coerulea Aquca_030_00038 I 0.700
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.680
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I 0.725
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I 0.680
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.704
29788.m000340 Ricinus communis 29788.m000340 I 0.704
Pm000809 Prunus mume Pm000809 I 0.701
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.701
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.669
TCM_022293 Theobroma cacao TCM_022293 I 0.810
TCM_041904 Theobroma cacao TCM_041904 I 0.701
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.671
AtMYB27 Vitis vinifera VIT_08s0007g04830 I 0.756
Ca_02593 Cicer arietinum Ca_02593 I 0.690
Cla008413 Citrullus lanatus Cla008413 I 0.704
Cla013488 Citrullus lanatus Cla013488 I 0.704
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I 0.725
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.680
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.701
orange1.1g044161m.g Citrus sinensis orange1.1g044161m.g I 0.722
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.701
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.701
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.674
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.674
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.680
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.701
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I 0.731
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.701
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.701
MDP0000177010 Malus domestica MDP0000177010 I 0.701
MDP0000143156 Malus domestica MDP0000143156 I 0.706
Carubv10019409m.g Capsella rubella Carubv10019409m.g I 0.725
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.701
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I 0.734
gene09683-v1.0-hybrid Fragaria vesca gene09683-v1.0-hybrid I 0.707
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.701
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.701
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.699
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.698
PK10274.1 Cannabis sativa PK10274.1 I 0.750
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.673
Bra006977 Brassica rapa Bra006977 I 0.694
Bra015029 Brassica rapa Bra015029 I 0.680
Bra018223 Brassica rapa Bra018223 I 0.698
Bra020289 Brassica rapa Bra020289 I 0.671
Bra028369 Brassica rapa Bra028369 I 0.680
Bra028550 Brassica rapa Bra028550 I 0.712
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.694
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.670
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.701
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.680
Bra006694 Brassica rapa Bra006694 I 0.671
Bra002533 Brassica rapa Bra002533 I 0.666
Bra001941 Brassica rapa Bra001941 I 0.680
MYB305 Arabidopsis thaliana AT3G24310 I 0.680
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.701
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.700
Bo1g098860 Brassica oleracea Bo1g098860 I 0.680
Bo2g025410 Brassica oleracea Bo2g025410 I 0.671
Bo3g083130 Brassica oleracea Bo3g083130 I 0.680
Bo3g130340 Brassica oleracea Bo3g130340 I 0.698
Bo6g067190 Brassica oleracea Bo6g067190 I 0.708
Bo7g033260 Brassica oleracea Bo7g033260 I 0.680
Bo8g082570 Brassica oleracea Bo8g082570 I 0.694
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I 0.709
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.701
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.701
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.700
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.690
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.699
OB01G54920 Oryza brachyantha OB01G54920 I 0.700
OBART01G45730 Oryza barthii OBART01G45730 I 0.700
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.700
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.700
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.700
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.669
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.704
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.699
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.697
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.697
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.671
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.662
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.701
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.674
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.701
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.666
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.694
cassava15759.m1 Manihot esculenta cassava15759.m1 N 0.673
PRUPE_ppa024805mg Prunus persica PRUPE_ppa024805mg N 0.685
Pm026334 Prunus mume Pm026334 N 0.703