CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G071600
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.013G071600
T287804_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.680
0.699
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.680
0.699
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G071600.1
Myb
14
61
KGEWSAEEDHKLRSYIQRYGHWNWRELPKYAGLKRCGKSCRLRWMNYL
Gorai.013G071600.1
Myb
67
112
RGNFTEEEDALIIKLHDEMGNRWSTIAKSFPGRTDNEIKNQWHAHL
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.013G072900
Gossypium raimondii
Gorai.013G072900
I
0.909
TCM_007868
Theobroma cacao
TCM_007868
I
0.818
Gorai.008G151100
Gossypium raimondii
Gorai.008G151100
I
0.804
GLYMA12G11330
Glycine max
GLYMA12G11330
I
0.756
Gorai.013G073000
Gossypium raimondii
Gorai.013G073000
N
0.739
gene01997-v1.0-hybrid
Fragaria vesca
gene01997-v1.0-hybrid
I
0.738
VIT_12s0134g00490
Vitis vinifera
VIT_12s0134g00490
I
0.737
GSMUA_Achr11G00410_001
Musa acuminata
GSMUA_Achr11G00410_001
I
0.732
cassava6764.valid.m1
Manihot esculenta
cassava6764.valid.m1
I
0.730
SapurV1A.0048s0170
Salix purpurea
SapurV1A.0048s0170
I
0.728
SapurV1A.2051s0040
Salix purpurea
SapurV1A.2051s0040
I
0.728
PGSC0003DMG400046667
Solanum tuberosum
PGSC0003DMG400046667
N
0.723
cassava14699.m1
Manihot esculenta
cassava14699.m1
I
0.723
GLYMA06G45554
Glycine max
GLYMA06G45554
I
0.721
POPTR_0019s14120
Populus trichocarpa
POPTR_0019s14120
I
0.717
SapurV1A.0417s0150
Salix purpurea
SapurV1A.0417s0150
I
0.714
GSMUA_Achr5G14600_001
Musa acuminata
GSMUA_Achr5G14600_001
I
0.713
OB0039G10010
Oryza brachyantha
OB0039G10010
I
0.713
GSMUA_Achr5G18600_001
Musa acuminata
GSMUA_Achr5G18600_001
I
0.711
cassava25784.m1
Manihot esculenta
cassava25784.m1
I
0.710
GLYMA06G45531
Glycine max
GLYMA06G45531
N
0.708
TRIUR3_31731
Triticum urartu
TRIUR3_31731
I
0.707
VIT_12s0134g00480
Vitis vinifera
VIT_12s0134g00480
I
0.706
GRMZM2G147346
Zea mays
GRMZM2G147346
I
0.705
PGSC0003DMG400047175
Solanum tuberosum
PGSC0003DMG400047175
N
0.704
ORUFI10G14060
Oryza rufipogon
ORUFI10G14060
I
0.704
BGIOSGA031688
Oryza indica
BGIOSGA031688
I
0.704
OS10G0478300
Oryza sativa
OS10G0478300
I
0.704
GSMUA_Achr11G22820_001
Musa acuminata
GSMUA_Achr11G22820_001
I
0.701
GSMUA_Achr4G21910_001
Musa acuminata
GSMUA_Achr4G21910_001
I
0.700
Lus10033737.g
Linum usitatissimum
Lus10033737.g
N
0.699
Aquca_030_00245
Aquilegia coerulea
Aquca_030_00245
N
0.699
Pavir.Ia01684
Panicum virgatum
Pavir.Ia01684
I
0.698
Pavir.J09313
Panicum virgatum
Pavir.J09313
I
0.698
Sb01g019270
Sorghum bicolor
Sb01g019270
I
0.698
Si040527m.g
Setaria italica
Si040527m.g
I
0.698
MTR_2g089420
Medicago truncatula
MTR_2g089420
N
0.696
cassava47180.m1
Manihot esculenta
cassava47180.m1
I
0.693
orange1.1g037956m.g
Citrus sinensis
orange1.1g037956m.g
N
0.691
TCM_026197
Theobroma cacao
TCM_026197
I
0.690
Lus10018518.g
Linum usitatissimum
Lus10018518.g
N
0.690
MDP0000897594
Malus domestica
MDP0000897594
I
0.689
Lus10033738.g
Linum usitatissimum
Lus10033738.g
N
0.689
PDK_20s1320951g001
Phoenix dactylifera
PDK_20s1320951g001
I
0.689
Lus10039734.g
Linum usitatissimum
Lus10039734.g
I
0.689
Lus10039735.g
Linum usitatissimum
Lus10039735.g
I
0.688
Lus10042561.g
Linum usitatissimum
Lus10042561.g
I
0.686
Lus10031607.g
Linum usitatissimum
Lus10031607.g
N
0.686
Lus10022021.g
Linum usitatissimum
Lus10022021.g
I
0.686
TCM_007865
Theobroma cacao
TCM_007865
I
0.686
PRUPE_ppa025095mg
Prunus persica
PRUPE_ppa025095mg
I
0.685
Pm015303
Prunus mume
Pm015303
I
0.685
Ciclev10017679m.g
Citrus clementina
Ciclev10017679m.g
I
0.685
Solyc07g054980.1
Solanum lycopersicum
Solyc07g054980.1
I
0.684
Gorai.002G016800
Gossypium raimondii
Gorai.002G016800
I
0.684
mgf018684m
Mimulus guttatus
mgf018684m
N
0.683
mgf022158m
Mimulus guttatus
mgf022158m
N
0.683
GLYMA12G32530
Glycine max
GLYMA12G32530
I
0.683
SapurV1A.0417s0130
Salix purpurea
SapurV1A.0417s0130
I
0.683
GLYMA06G45520
Glycine max
GLYMA06G45520
N
0.683
Bostr.24513s0107
Boechera stricta
Bostr.24513s0107
I
0.682
GSMUA_Achr5G03920_001
Musa acuminata
GSMUA_Achr5G03920_001
I
0.682
Eucgr.H00158
Eucalyptus grandis
Eucgr.H00158
I
0.682
GSMUA_Achr1G09180_001
Musa acuminata
GSMUA_Achr1G09180_001
I
0.680
Bostr.25219s0339
Boechera stricta
Bostr.25219s0339
I
0.680
SapurV1A.0555s0160
Salix purpurea
SapurV1A.0555s0160
I
0.680
Thhalv10008531m.g
Eutrema salsugineum
Thhalv10008531m.g
I
0.680
POPTR_0005s24550
Populus trichocarpa
POPTR_0005s24550
I
0.680
ATMYB13
Arabidopsis lyrata
fgenesh2_kg.1__590__AT1G06180.1
I
0.680
ATMYB13
Arabidopsis thaliana
AT1G06180
D
0.680
POPTR_0001s02240
Populus trichocarpa
POPTR_0001s02240
I
0.680
cassava37350.valid.m1
Manihot esculenta
cassava37350.valid.m1
I
0.680
Ca_22597
Cicer arietinum
Ca_22597
N
0.680
Eucgr.H03057
Eucalyptus grandis
Eucgr.H03057
I
0.679
mgf011672m
Mimulus guttatus
mgf011672m
I
0.679
Gorai.012G132400
Gossypium raimondii
Gorai.012G132400
I
0.679
GLYMA12G11490
Glycine max
GLYMA12G11490
N
0.679
GLYMA03G41100
Glycine max
GLYMA03G41100
I
0.679
Gorai.004G183600
Gossypium raimondii
Gorai.004G183600
I
0.678
GLYMA13G37903
Glycine max
GLYMA13G37903
I
0.678
SapurV1A.0233s0280
Salix purpurea
SapurV1A.0233s0280
I
0.677
GSMUA_Achr11G23500_001
Musa acuminata
GSMUA_Achr11G23500_001
N
0.677
MDP0000155426
Malus domestica
MDP0000155426
I
0.677
MTR_0008s0390
Medicago truncatula
MTR_0008s0390
N
0.676
MTR_0251s0050
Medicago truncatula
MTR_0251s0050
N
0.676
POPTR_0003s09300
Populus trichocarpa
POPTR_0003s09300
I
0.676
AMTR_s00032p00057800
Amborella trichopoda
AMTR_s00032p00057800
I
0.676
POPTR_0019s14140
Populus trichocarpa
POPTR_0019s14140
N
0.675
Gorai.004G183500
Gossypium raimondii
Gorai.004G183500
I
0.675
OB02G31990
Oryza brachyantha
OB02G31990
I
0.674
Solyc07g054960.1
Solanum lycopersicum
Solyc07g054960.1
I
0.674
BGIOSGA006005
Oryza indica
BGIOSGA006005
I
0.674
orange1.1g042846m.g
Citrus sinensis
orange1.1g042846m.g
I
0.674
ORGLA02G0213400
Oryza glaberrima
ORGLA02G0213400
I
0.674
MDP0000407613
Malus domestica
MDP0000407613
N
0.674
ORUFI02G25970
Oryza rufipogon
ORUFI02G25970
I
0.674
PGSC0003DMG400013405
Solanum tuberosum
PGSC0003DMG400013405
I
0.674
MYB30
Oryza sativa
OS02G0624300
I
0.674
PRUPE_ppa026553mg
Prunus persica
PRUPE_ppa026553mg
N
0.673
Pm015302
Prunus mume
Pm015302
N
0.673
MDP0000145050
Malus domestica
MDP0000145050
I
0.672
Lus10033889.g
Linum usitatissimum
Lus10033889.g
I
0.672
Lus10003557.g
Linum usitatissimum
Lus10003557.g
I
0.672
gene08084-v1.0-hybrid
Fragaria vesca
gene08084-v1.0-hybrid
I
0.672
Cla006077
Citrullus lanatus
Cla006077
I
0.672
PRUPE_ppa021921mg
Prunus persica
PRUPE_ppa021921mg
I
0.672
PK08038.1
Cannabis sativa
PK08038.1
I
0.672
ORUFI04G20280
Oryza rufipogon
ORUFI04G20280
I
0.672
ORGLA04G0158700
Oryza glaberrima
ORGLA04G0158700
I
0.672
OB04G25860
Oryza brachyantha
OB04G25860
I
0.672
Pm020596
Prunus mume
Pm020596
I
0.672
Si010814m.g
Setaria italica
Si010814m.g
I
0.672
Gorai.010G148300
Gossypium raimondii
Gorai.010G148300
N
0.671
Eucgr.D00050
Eucalyptus grandis
Eucgr.D00050
N
0.671
Gorai.011G021300
Gossypium raimondii
Gorai.011G021300
N
0.670
cassava26894.m1
Manihot esculenta
cassava26894.m1
N
0.670
Solyc03g005570.2
Solanum lycopersicum
Solyc03g005570.2
I
0.670
MDP0000131822
Malus domestica
MDP0000131822
I
0.669
Ciclev10022057m.g
Citrus clementina
Ciclev10022057m.g
I
0.669
ONIVA04G17140
Oryza nivara
ONIVA04G17140
I
0.668
MTR_0008s0470
Medicago truncatula
MTR_0008s0470
N
0.668
GSMUA_Achr4G28850_001
Musa acuminata
GSMUA_Achr4G28850_001
I
0.668
Pavir.Gb00650
Panicum virgatum
Pavir.Gb00650
I
0.668
TCM_030020
Theobroma cacao
TCM_030020
I
0.668
MTR_0008s0280
Medicago truncatula
MTR_0008s0280
N
0.667
GRMZM2G127857
Zea mays
GRMZM2G127857
I
0.667
PK29337.1
Cannabis sativa
PK29337.1
I
0.666
POPTR_0013s14560
Populus trichocarpa
POPTR_0013s14560
I
0.666
GLYMA12G32541
Glycine max
GLYMA12G32541
N
0.665
Ciclev10017677m.g
Citrus clementina
Ciclev10017677m.g
I
0.665
cassava26895.m1
Manihot esculenta
cassava26895.m1
N
0.665
MDP0000148689
Malus domestica
MDP0000148689
N
0.665
Eucgr.D00040
Eucalyptus grandis
Eucgr.D00040
I
0.664
Eucgr.D00042
Eucalyptus grandis
Eucgr.D00042
I
0.664
Ciclev10017435m.g
Citrus clementina
Ciclev10017435m.g
I
0.664
Ciclev10018311m.g
Citrus clementina
Ciclev10018311m.g
I
0.664
PK18231.1
Cannabis sativa
PK18231.1
I
0.663
PK20358.1
Cannabis sativa
PK20358.1
I
0.663
chr1.CM0295.20.nd
Lotus japonicus
chr1.CM0295.20.nd
I
0.663
SapurV1A.0048s0160
Salix purpurea
SapurV1A.0048s0160
N
0.663
Cucsa.053600
Cucumis sativus
Cucsa.053600
I
0.663
Gorai.011G173900
Gossypium raimondii
Gorai.011G173900
I
0.663
Cagra.1671s0249
Capsella grandiflora
Cagra.1671s0249
I
0.663
Pm009880
Prunus mume
Pm009880
N
0.663
VIT_07s0005g03340
Vitis vinifera
VIT_07s0005g03340
I
0.663
Solyc09g090130.2
Solanum lycopersicum
Solyc09g090130.2
I
0.663
TCM_004046
Theobroma cacao
TCM_004046
I
0.663
Ciclev10021699m.g
Citrus clementina
Ciclev10021699m.g
I
0.663
evm.TU.supercontig_44.60
Carica papaya
evm.TU.supercontig_44.60
I
0.663
OMERI10G10120
Oryza meridionalis
OMERI10G10120
I
0.663
Gorai.001G177100
Gossypium raimondii
Gorai.001G177100
I
0.663
Gorai.007G146200
Gossypium raimondii
Gorai.007G146200
I
0.663
PGSC0003DMG400017223
Solanum tuberosum
PGSC0003DMG400017223
I
0.663
gene11462-v1.0-hybrid
Fragaria vesca
gene11462-v1.0-hybrid
I
0.663
Solyc08g076700.1
Solanum lycopersicum
Solyc08g076700.1
I
0.663
evm.TU.supercontig_50.19
Carica papaya
evm.TU.supercontig_50.19
I
0.663
PK24260.1
Cannabis sativa
PK24260.1
N
0.662
mgf022141m
Mimulus guttatus
mgf022141m
N
0.662
Pavir.Aa01310
Panicum virgatum
Pavir.Aa01310
I
0.661
GSMUA_Achr2G18090_001
Musa acuminata
GSMUA_Achr2G18090_001
I
0.661
Pavir.Ab02340
Panicum virgatum
Pavir.Ab02340
I
0.661
Eucgr.A01766
Eucalyptus grandis
Eucgr.A01766
I
0.661
Sb04g026480
Sorghum bicolor
Sb04g026480
I
0.661
SELMODRAFT_38058
Selaginella moellendorffii
SELMODRAFT_38058
I
0.661