CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G139200
(
Gossypium raimondii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gorai.013G139200
T287819_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY
RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.867
0.946
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.867
0.946
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.830
0.925
MYB51
M07010_2.00
Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN
Dap-seq
OMalley et al.(2016)
MYB51_col_a
0.684
0.742
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.664
0.720
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G139200.1
Myb
14
61
KGAWTKEEDQRLINYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL
Gorai.013G139200.1
Myb
67
112
RGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI
Gorai.013G139200.2
Myb
19
40
FGGTAGLLRCGKSCRLRWINYL
Gorai.013G139200.2
Myb
46
91
RGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI
Links
Other
Myb/SANT
family TFs
Other
Gossypium raimondii
TFs
727 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy