Lus10001754.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10001754.g T287855_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.857 0.957
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.857 0.957
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.857 0.957
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.857 0.957
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.815 0.957
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.815 0.957
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.815 0.957
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.813 0.830
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.807 0.809
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.807 0.809
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.807 0.809
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.790 0.830
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.790 0.830
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.790 0.830
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.790 0.830
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.738 0.745
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.738 0.745
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.718 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10001754 Myb 95 146

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

798 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29968.m000644 Ricinus communis 29968.m000644 I 0.000
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.000
Bo2g134600 Brassica oleracea Bo2g134600 I 0.000
Bo7g078820 Brassica oleracea Bo7g078820 I 0.000
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.000
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.000
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.000
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.000
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.000
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.000
Cla005897 Citrullus lanatus Cla005897 N 0.000
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.000
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.000
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.000
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.000
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.000
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.000
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.000
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.000
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.000
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.000
MDP0000290118 Malus domestica MDP0000290118 I 0.000
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.000
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.000
PK02661.1 Cannabis sativa PK02661.1 I 0.000
Pm005894 Prunus mume Pm005894 I 0.000
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.000
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.000
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.000
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.000
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N 0.000
TCM_011266 Theobroma cacao TCM_011266 I 0.000
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.000
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.000