Lus10002593.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10002593.g T287866_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.754 0.892
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.754 0.882
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.754 0.882
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.732 0.871
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.682 0.720
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.682 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10002593 Myb 14 61
Lus10002593 Myb 67 112

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10018418.g Linum usitatissimum Lus10018418.g I 0.861
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.784
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.775
Bra038774 Brassica rapa Bra038774 I 0.770
Cagra.2455s0004 Capsella grandiflora Cagra.2455s0004 I 0.770
Bo3g162580 Brassica oleracea Bo3g162580 I 0.770
Bra013526 Brassica rapa Bra013526 I 0.770
ATMYB102 Arabidopsis lyrata fgenesh2_kg.7__2173__AT4G21440.1 I 0.770
ATMYB102 Arabidopsis thaliana AT4G21440 I 0.770
Carubv10004873m.g Capsella rubella Carubv10004873m.g I 0.770
Thhalv10027571m.g Eutrema salsugineum Thhalv10027571m.g I 0.770
Bo1g024170 Brassica oleracea Bo1g024170 I 0.770
Bra020892 Brassica rapa Bra020892 I 0.770
Bo7g107420 Brassica oleracea Bo7g107420 I 0.766
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.763
Bostr.10689s0089 Boechera stricta Bostr.10689s0089 I 0.761
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.758
MDP0000492221 Malus domestica MDP0000492221 I 0.757
Bra024224 Brassica rapa Bra024224 I 0.755
Bo7g111870 Brassica oleracea Bo7g111870 I 0.755
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.754
Ca_00232 Cicer arietinum Ca_00232 I 0.754
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.754
Cla001360 Citrullus lanatus Cla001360 I 0.754
Pm009892 Prunus mume Pm009892 I 0.754
TCM_030009 Theobroma cacao TCM_030009 I 0.754
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.754
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.754
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.754
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.754
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.754
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.754
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.754
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.754
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.754
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.754
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.754
mgf018114m Mimulus guttatus mgf018114m I 0.754
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.754
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.754
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.754
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.754
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.754
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.754
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.753
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.753
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.751
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.750
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.750
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.749
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.749
Bo9g076410 Brassica oleracea Bo9g076410 I 0.749
Bra029553 Brassica rapa Bra029553 I 0.749
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.744
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.744
Cla019747 Citrullus lanatus Cla019747 I 0.744
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.742
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.740
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.740
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.740
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.740
Cla007838 Citrullus lanatus Cla007838 I 0.740
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.740
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.739
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.738
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.738
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.738
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.738
Bo1g051220 Brassica oleracea Bo1g051220 I 0.738
Bra026281 Brassica rapa Bra026281 I 0.738
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.735
SapurV1A.0417s0210 Salix purpurea SapurV1A.0417s0210 I 0.733
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.732
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.730
Ca_22021 Cicer arietinum Ca_22021 I 0.730
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.730
GLYMA13G37820 Glycine max GLYMA13G37820 I 0.722
GLYMA06G45460 Glycine max GLYMA06G45460 I 0.720
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.720
POPTR_0019s14070 Populus trichocarpa POPTR_0019s14070 I 0.719
Ca_14119 Cicer arietinum Ca_14119 I 0.715
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.715
MTR_2g089620 Medicago truncatula MTR_2g089620 I 0.715
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.713
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.713
OS07G0558100 Oryza sativa OS07G0558100 I 0.713
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.713
MLOC_62436 Hordeum vulgare MLOC_62436 I 0.713
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.713
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.713
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.713
Si030273m.g Setaria italica Si030273m.g I 0.713
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.713
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.713
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.713
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.713
OBART07G18450 Oryza barthii OBART07G18450 I 0.713
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.713
BRADI1G24887 Brachypodium distachyon BRADI1G24887 I 0.713
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.713
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.710
TCM_007904 Theobroma cacao TCM_007904 I 0.710
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.710
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.710
MTR_5g029840 Medicago truncatula MTR_5g029840 I 0.710
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.710
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.710
29983.m003281 Ricinus communis 29983.m003281 I 0.710
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.710
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.710
POPTR_0001s02240 Populus trichocarpa POPTR_0001s02240 I 0.706
SapurV1A.0555s0160 Salix purpurea SapurV1A.0555s0160 I 0.706
mgf026502m Mimulus guttatus mgf026502m I 0.704
mgf025298m Mimulus guttatus mgf025298m I 0.704
mgf023669m Mimulus guttatus mgf023669m I 0.704
gene01992-v1.0-hybrid Fragaria vesca gene01992-v1.0-hybrid I 0.703
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.701
GSMUA_Achr1G23990_001 Musa acuminata GSMUA_Achr1G23990_001 I 0.697
GLYMA12G11600 Glycine max GLYMA12G11600 I 0.695
Aquca_038_00198 Aquilegia coerulea Aquca_038_00198 I 0.695
Gorai.002G077200 Gossypium raimondii Gorai.002G077200 I 0.695
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.694
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.693
Gorai.012G132200 Gossypium raimondii Gorai.012G132200 I 0.692
Traes_2AS_FA7059723 Triticum aestivum Traes_2AS_FA7059723 I 0.689
Lus10039743.g Linum usitatissimum Lus10039743.g I 0.689
OB07G24240 Oryza brachyantha OB07G24240 I 0.689
evm.TU.supercontig_34.69 Carica papaya evm.TU.supercontig_34.69 I 0.688
Ca_11494 Cicer arietinum Ca_11494 I 0.688
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.687
GLYMA12G32610 Glycine max GLYMA12G32610 I 0.687
Traes_2DS_49959692B1 Triticum aestivum Traes_2DS_49959692B1 I 0.685
MDP0000468201 Malus domestica MDP0000468201 I 0.685
Cagra.3356s0071 Capsella grandiflora Cagra.3356s0071 I 0.685
Carubv10006864m.g Capsella rubella Carubv10006864m.g I 0.685
F775_02918 Aegilops tauschii F775_02918 I 0.685
MDP0000710259 Malus domestica MDP0000710259 I 0.685
Traes_2DS_49959692B Triticum aestivum Traes_2DS_49959692B I 0.685
Bo1g017860 Brassica oleracea Bo1g017860 I 0.682
MYB39 Arabidopsis thaliana AT4G17785 D 0.682
Bra021033 Brassica rapa Bra021033 I 0.682
MYB39 Arabidopsis lyrata fgenesh2_kg.7__2528__AT4G17785.1 I 0.682
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.682
Bra040181 Brassica rapa Bra040181 I 0.682
Pm015309 Prunus mume Pm015309 I 0.680
PRUPE_ppa016708mg Prunus persica PRUPE_ppa016708mg I 0.680
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.679
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I 0.678
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.677
MDP0000144751 Malus domestica MDP0000144751 I 0.675
POPTR_0001s41920 Populus trichocarpa POPTR_0001s41920 I 0.675
SapurV1A.0840s0010 Salix purpurea SapurV1A.0840s0010 I 0.675
GSMUA_AchrUn_randomG07900_001 Musa acuminata GSMUA_AchrUn_randomG07900_001 I 0.674
PRUPE_ppa019280mg Prunus persica PRUPE_ppa019280mg I 0.674
Pm023191 Prunus mume Pm023191 I 0.674
POPTR_0003s09300 Populus trichocarpa POPTR_0003s09300 I 0.672
TCM_031294 Theobroma cacao TCM_031294 I 0.671
Ciclev10009050m.g Citrus clementina Ciclev10009050m.g I 0.671
LjSGA_022617.1 Lotus japonicus LjSGA_022617.1 I 0.671
orange1.1g045387m.g Citrus sinensis orange1.1g045387m.g I 0.671
Gorai.004G183600 Gossypium raimondii Gorai.004G183600 I 0.670
TCM_016551 Theobroma cacao TCM_016551 I 0.670
evm.TU.supercontig_12.22 Carica papaya evm.TU.supercontig_12.22 I 0.668
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.668
Gorai.004G183500 Gossypium raimondii Gorai.004G183500 I 0.667
GLYMA13G35810 Glycine max GLYMA13G35810 I 0.666
GLYMA12G34650 Glycine max GLYMA12G34650 I 0.666
GSMUA_Achr9G24560_001 Musa acuminata GSMUA_Achr9G24560_001 I 0.665
PRUPE_ppa021577mg Prunus persica PRUPE_ppa021577mg I 0.664
Pm011657 Prunus mume Pm011657 I 0.664
gene02214-v1.0-hybrid Fragaria vesca gene02214-v1.0-hybrid I 0.662
MDP0000286526 Malus domestica MDP0000286526 I 0.662