CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10005079.g
(
Linum usitatissimum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Lus10005079.g
T287883_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATMYB121
M07091_2.00
Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN
Dap-seq
OMalley et al.(2016)
MYB121_col_a
0.778
0.806
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.681
0.688
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.681
0.688
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10005079
Myb
18
65
KGPWAPEEDKLLTEYVNLHGEGRWSSVSKCTGLKRSGKSSRLRWVNYL
Lus10005079
Myb
71
116
RGQLTPQEEGIVIELHAIWGNKWSTIASYLPGRTDNEIKNYWRTQF
Links
Other
Myb/SANT
family TFs
Other
Linum usitatissimum
TFs
273 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy