Lus10005864.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10005864.g T287894_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW

WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.673 0.717
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR

YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.673 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10005864 Myb 116 162
Lus10005864 Myb 168 212

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.663
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.664
MYB118 Arabidopsis thaliana AT3G27785 D 0.673
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.664
Bra025299 Brassica rapa Bra025299 I 0.676
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.664
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.664
Cla008304 Citrullus lanatus Cla008304 N 0.691
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.678
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.678
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.691
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.673
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.678
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.678
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.704
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.667
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.683
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.683
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.691
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.699
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.695
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.667
MDP0000319656 Malus domestica MDP0000319656 I 0.704
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.712
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.692
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.672
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.707
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.708
Pm000541 Prunus mume Pm000541 I 0.704
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.704
29681.m001315 Ricinus communis 29681.m001315 N 0.712
SapurV1A.0041s0840 Salix purpurea SapurV1A.0041s0840 N 0.663
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.678
TCM_041651 Theobroma cacao TCM_041651 N 0.661
TCM_016909 Theobroma cacao TCM_016909 I 0.661