Lus10010055.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10010055.g T287931_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.714 0.871
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN

NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.714 0.871
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY

RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.714 0.860
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW

WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.700 0.849
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.690 0.839
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW

WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.690 0.839
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH

DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.690 0.839
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10010055 Myb 11 57
Lus10010055 Myb 63 108

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.861
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.817
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.793
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.793
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.793
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.793
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.784
Pm005332 Prunus mume Pm005332 I 0.780
MDP0000463846 Malus domestica MDP0000463846 I 0.780
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.780
MDP0000275800 Malus domestica MDP0000275800 I 0.776
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.775
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.772
30170.m013698 Ricinus communis 30170.m013698 I 0.768
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.768
PK17282.1 Cannabis sativa PK17282.1 I 0.765
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.763
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.762
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.762
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.760
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.758
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.758
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.756
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.756
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.756
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.756
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.756
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.754
Cla020946 Citrullus lanatus Cla020946 I 0.753
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.750
Gorai.009G276400 Gossypium raimondii Gorai.009G276400 I 0.750
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.750
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.748
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.748
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.748
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.748
29970.m000987 Ricinus communis 29970.m000987 I 0.747
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.745
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.745
Ca_02182 Cicer arietinum Ca_02182 I 0.742
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.741
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.736
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.736
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.734
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.732
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.732
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.731
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.731
MDP0000232454 Malus domestica MDP0000232454 I 0.731
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.731
MDP0000196986 Malus domestica MDP0000196986 I 0.731
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.730
mgf023922m Mimulus guttatus mgf023922m I 0.730
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.728
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.728
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.728
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.727
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.726
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.722
TCM_000696 Theobroma cacao TCM_000696 I 0.722
29801.m003096 Ricinus communis 29801.m003096 I 0.718
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.717
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.716
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.716
TCM_007138 Theobroma cacao TCM_007138 I 0.715
PK28565.1 Cannabis sativa PK28565.1 D 0.714
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.714
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.714
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.714
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.714
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.714
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.713
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.713
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.713
OBART09G00310 Oryza barthii OBART09G00310 I 0.713
OB09G10200 Oryza brachyantha OB09G10200 I 0.713
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.713
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.713
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.713
OS09G0106700 Oryza sativa OS09G0106700 I 0.713
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.713
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.713
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.712
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.712
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.711
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.711
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.709
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.709
Si032789m.g Setaria italica Si032789m.g I 0.709
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.707
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.706
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.705
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.705
Cla022947 Citrullus lanatus Cla022947 I 0.705
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.704
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.704
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.704
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.704
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.704
Bo3g153550 Brassica oleracea Bo3g153550 I 0.703
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.700
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.700
Bra011749 Brassica rapa Bra011749 I 0.700
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.700
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.700
MYB73 Arabidopsis thaliana AT4G37260 D 0.700
Bo1g004900 Brassica oleracea Bo1g004900 I 0.700
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.699
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.699
Bra010593 Brassica rapa Bra010593 I 0.696
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.696
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.694
Cla014191 Citrullus lanatus Cla014191 I 0.694
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.692
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.692
GRMZM2G369799 Zea mays GRMZM2G369799 I 0.692
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I 0.692
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.692
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I 0.692
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.691
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.690
MYB44 Arabidopsis thaliana AT5G67300 D 0.690
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.690
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.690
Bo7g063830 Brassica oleracea Bo7g063830 I 0.690
Bo4g151410 Brassica oleracea Bo4g151410 I 0.690
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.690
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.690
Bra032176 Brassica rapa Bra032176 I 0.690
Bra012149 Brassica rapa Bra012149 I 0.690
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.690
Cla006872 Citrullus lanatus Cla006872 I 0.686
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.686
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.685
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.685
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.684
Si022959m.g Setaria italica Si022959m.g I 0.684
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.681
Bo2g167960 Brassica oleracea Bo2g167960 I 0.681
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.681
Ca_12468 Cicer arietinum Ca_12468 I 0.676
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.674
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.673
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.673
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.672
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.672
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.672
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.670
Pm021211 Prunus mume Pm021211 I 0.670
mgf014089m Mimulus guttatus mgf014089m I 0.669
mgf002573m Mimulus guttatus mgf002573m I 0.668
Bo7g118450 Brassica oleracea Bo7g118450 I 0.666
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.662
MDP0000298689 Malus domestica MDP0000298689 I 0.662
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.662
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.662
OBART01G45880 Oryza barthii OBART01G45880 N 0.661
BGIOSGA000003 Oryza indica BGIOSGA000003 N 0.661
OS01G0977300 Oryza sativa OS01G0977300 N 0.661
ORUFI01G49370 Oryza rufipogon ORUFI01G49370 N 0.661
ORGLA01G0396300 Oryza glaberrima ORGLA01G0396300 N 0.661
OPUNC01G44800 Oryza punctata OPUNC01G44800 N 0.661
ONIVA01G52120 Oryza nivara ONIVA01G52120 N 0.661
OGLUM01G50230 Oryza glumaepatula OGLUM01G50230 N 0.661