Lus10018418.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10018418.g T288006_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC

GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.778 0.914
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.778 0.903
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH

DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.778 0.903
AtMYB41
M07109_2.00
Arabidopsis thaliana
DHDBBYYACCTAMYW

WRKTAGGTRRVVHDH
Dap-seq
OMalley et al.(2016)
MYB41_col_a
0.756 0.892
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.701 0.731
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH

DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.701 0.731
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH

DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.661 0.828
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN

NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.661 0.828
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10018418 Myb 14 61
Lus10018418 Myb 67 112

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02918 Aegilops tauschii F775_02918 I 0.708
F775_26732 Aegilops tauschii F775_26732 I 0.666
AMTR_s00001p00105570 Amborella trichopoda AMTR_s00001p00105570 I 0.676
AMTR_s00003p00271440 Amborella trichopoda AMTR_s00003p00271440 I 0.671
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.664
Aquca_038_00198 Aquilegia coerulea Aquca_038_00198 I 0.719
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.778
MYB39 Arabidopsis lyrata fgenesh2_kg.7__2528__AT4G17785.1 I 0.701
ATMYB102 Arabidopsis lyrata fgenesh2_kg.7__2173__AT4G21440.1 I 0.793
fgenesh1_pm.C_scaffold_8001114 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001114 I 0.661
fgenesh1_pg.C_scaffold_8001466 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001466 I 0.661
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.758
MYB49 Arabidopsis thaliana AT5G54230 D 0.661
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.778
MYB39 Arabidopsis thaliana AT4G17785 D 0.701
ATMYB102 Arabidopsis thaliana AT4G21440 I 0.793
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.756
Bostr.10689s0089 Boechera stricta Bostr.10689s0089 I 0.784
Bostr.26833s0846 Boechera stricta Bostr.26833s0846 I 0.661
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.776
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.762
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.701
BRADI5G16707 Brachypodium distachyon BRADI5G16707 I 0.663
BRADI1G24887 Brachypodium distachyon BRADI1G24887 I 0.737
Bo3g162580 Brassica oleracea Bo3g162580 I 0.793
Bo2g012520 Brassica oleracea Bo2g012520 I 0.668
Bo1g017860 Brassica oleracea Bo1g017860 I 0.701
Bo1g024170 Brassica oleracea Bo1g024170 I 0.793
Bo9g076410 Brassica oleracea Bo9g076410 I 0.773
Bo1g051220 Brassica oleracea Bo1g051220 I 0.762
Bo7g111870 Brassica oleracea Bo7g111870 I 0.779
Bo7g107420 Brassica oleracea Bo7g107420 I 0.789
Bo3g022210 Brassica oleracea Bo3g022210 I 0.661
Bo8g049720 Brassica oleracea Bo8g049720 I 0.664
Bra026281 Brassica rapa Bra026281 I 0.762
Bra020892 Brassica rapa Bra020892 I 0.793
Bra021033 Brassica rapa Bra021033 I 0.701
Bra024224 Brassica rapa Bra024224 I 0.779
Bra029033 Brassica rapa Bra029033 I 0.661
Bra029553 Brassica rapa Bra029553 I 0.773
Bra013526 Brassica rapa Bra013526 I 0.793
Bra038774 Brassica rapa Bra038774 I 0.793
Bra040181 Brassica rapa Bra040181 I 0.701
Cagra.2455s0004 Capsella grandiflora Cagra.2455s0004 I 0.793
Cagra.3356s0071 Capsella grandiflora Cagra.3356s0071 I 0.704
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.773
Cagra.1629s0007 Capsella grandiflora Cagra.1629s0007 I 0.661
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.762
Carubv10026801m.g Capsella rubella Carubv10026801m.g I 0.661
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.762
Carubv10006864m.g Capsella rubella Carubv10006864m.g I 0.704
Carubv10004873m.g Capsella rubella Carubv10004873m.g I 0.793
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.773
evm.TU.supercontig_12.22 Carica papaya evm.TU.supercontig_12.22 I 0.692
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.783
evm.TU.supercontig_34.69 Carica papaya evm.TU.supercontig_34.69 I 0.712
evm.TU.supercontig_90.68 Carica papaya evm.TU.supercontig_90.68 I 0.671
Ca_14119 Cicer arietinum Ca_14119 I 0.739
Ca_22021 Cicer arietinum Ca_22021 I 0.750
Ca_11494 Cicer arietinum Ca_11494 I 0.703
Ca_00232 Cicer arietinum Ca_00232 I 0.774
Cla001360 Citrullus lanatus Cla001360 I 0.778
Cla007838 Citrullus lanatus Cla007838 I 0.764
Cla019747 Citrullus lanatus Cla019747 I 0.760
Ciclev10003251m.g Citrus clementina Ciclev10003251m.g I 0.670
Ciclev10009050m.g Citrus clementina Ciclev10009050m.g I 0.715
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.778
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.734
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.778
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.734
orange1.1g045387m.g Citrus sinensis orange1.1g045387m.g I 0.715
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.778
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.764
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.760
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.778
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.701
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.664
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.778
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.772
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.734
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.762
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.778
Thhalv10027571m.g Eutrema salsugineum Thhalv10027571m.g I 0.793
Thhalv10014125m.g Eutrema salsugineum Thhalv10014125m.g I 0.661
gene01992-v1.0-hybrid Fragaria vesca gene01992-v1.0-hybrid I 0.726
gene08084-v1.0-hybrid Fragaria vesca gene08084-v1.0-hybrid I 0.672
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.775
GLYMA13G35810 Glycine max GLYMA13G35810 I 0.714
GLYMA13G37820 Glycine max GLYMA13G37820 I 0.771
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.774
GLYMA12G34650 Glycine max GLYMA12G34650 I 0.714
GLYMA12G32610 Glycine max GLYMA12G32610 I 0.736
GLYMA12G11600 Glycine max GLYMA12G11600 I 0.715
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.774
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.774
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.759
GLYMA06G45460 Glycine max GLYMA06G45460 I 0.719
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.670
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.778
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.833
Gorai.012G132200 Gossypium raimondii Gorai.012G132200 I 0.712
Gorai.003G183700 Gossypium raimondii Gorai.003G183700 I 0.662
Gorai.004G183500 Gossypium raimondii Gorai.004G183500 I 0.683
Gorai.004G183600 Gossypium raimondii Gorai.004G183600 I 0.686
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.721
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.717
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.778
Gorai.002G077200 Gossypium raimondii Gorai.002G077200 I 0.695
MLOC_62436 Hordeum vulgare MLOC_62436 I 0.761
MLOC_51960 Hordeum vulgare MLOC_51960 I 0.674
LPERR02G26970 Leersia perrieri LPERR02G26970 I 0.670
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.761
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.795
Lus10002593.g Linum usitatissimum Lus10002593.g I 0.861
Lus10001093.g Linum usitatissimum Lus10001093.g I 0.663
Lus10040139.g Linum usitatissimum Lus10040139.g I 0.663
Lus10039743.g Linum usitatissimum Lus10039743.g I 0.712
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.770
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.739
chr3.CM0590.850.nc Lotus japonicus chr3.CM0590.850.nc I 0.679
LjSGA_022617.1 Lotus japonicus LjSGA_022617.1 I 0.695
MDP0000897594 Malus domestica MDP0000897594 I 0.663
MDP0000468201 Malus domestica MDP0000468201 I 0.709
MDP0000492221 Malus domestica MDP0000492221 I 0.781
MDP0000144751 Malus domestica MDP0000144751 I 0.695
MDP0000710259 Malus domestica MDP0000710259 I 0.709
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.740
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.734
cassava44885.m1 Manihot esculenta cassava44885.m1 I 0.696
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.803
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.734
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.763
MTR_2g089620 Medicago truncatula MTR_2g089620 I 0.739
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.774
MTR_5g029840 Medicago truncatula MTR_5g029840 I 0.709
mgf018114m Mimulus guttatus mgf018114m I 0.778
mgf026502m Mimulus guttatus mgf026502m I 0.728
mgf023669m Mimulus guttatus mgf023669m I 0.728
mgf025298m Mimulus guttatus mgf025298m I 0.728
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.692
GSMUA_AchrUn_randomG28780_001 Musa acuminata GSMUA_AchrUn_randomG28780_001 I 0.664
GSMUA_Achr9G24560_001 Musa acuminata GSMUA_Achr9G24560_001 I 0.713
GSMUA_Achr1G23990_001 Musa acuminata GSMUA_Achr1G23990_001 I 0.713
GSMUA_Achr6G29310_001 Musa acuminata GSMUA_Achr6G29310_001 I 0.696
GSMUA_Achr1G09180_001 Musa acuminata GSMUA_Achr1G09180_001 I 0.665
GSMUA_AchrUn_randomG07900_001 Musa acuminata GSMUA_AchrUn_randomG07900_001 I 0.689
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I 0.666
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.667
OBART02G32900 Oryza barthii OBART02G32900 I 0.679
OBART07G18450 Oryza barthii OBART07G18450 I 0.761
OB07G24240 Oryza brachyantha OB07G24240 I 0.737
ORGLA02G0284500 Oryza glaberrima ORGLA02G0284500 I 0.679
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.761
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.761
OGLUM02G33500 Oryza glumaepatula OGLUM02G33500 I 0.679
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.761
OMERI02G31500 Oryza meridionalis OMERI02G31500 I 0.679
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.761
ONIVA02G35050 Oryza nivara ONIVA02G35050 I 0.679
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.761
OPUNC02G30360 Oryza punctata OPUNC02G30360 I 0.679
ORUFI02G34560 Oryza rufipogon ORUFI02G34560 I 0.679
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.761
OS07G0558100 Oryza sativa OS07G0558100 I 0.761
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.737
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.737
e_gw1.389.9.1 Physcomitrella patens e_gw1.389.9.1 I 0.671
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.778
POPTR_0001s02240 Populus trichocarpa POPTR_0001s02240 I 0.701
POPTR_0001s41920 Populus trichocarpa POPTR_0001s41920 I 0.691
POPTR_0019s14070 Populus trichocarpa POPTR_0019s14070 I 0.742
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.734
POPTR_0011s12750 Populus trichocarpa POPTR_0011s12750 I 0.661
POPTR_0007s05360 Populus trichocarpa POPTR_0007s05360 I 0.661
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.778
POPTR_0003s09300 Populus trichocarpa POPTR_0003s09300 I 0.667
Pm015309 Prunus mume Pm015309 I 0.703
Pm009892 Prunus mume Pm009892 I 0.778
Pm011657 Prunus mume Pm011657 I 0.684
Pm020596 Prunus mume Pm020596 I 0.663
Pm023191 Prunus mume Pm023191 I 0.665
PRUPE_ppa016708mg Prunus persica PRUPE_ppa016708mg I 0.703
PRUPE_ppa021921mg Prunus persica PRUPE_ppa021921mg I 0.663
PRUPE_ppa019280mg Prunus persica PRUPE_ppa019280mg I 0.665
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.787
PRUPE_ppa021577mg Prunus persica PRUPE_ppa021577mg I 0.684
29983.m003281 Ricinus communis 29983.m003281 I 0.734
30054.m000809 Ricinus communis 30054.m000809 I 0.668
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.754
SapurV1A.0840s0010 Salix purpurea SapurV1A.0840s0010 I 0.691
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.754
SapurV1A.0417s0210 Salix purpurea SapurV1A.0417s0210 I 0.756
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.710
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.774
SapurV1A.0555s0160 Salix purpurea SapurV1A.0555s0160 I 0.701
Si030273m.g Setaria italica Si030273m.g I 0.737
Si017785m.g Setaria italica Si017785m.g I 0.661
Solyc08g076710.2 Solanum lycopersicum Solyc08g076710.2 I 0.676
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.778
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.703
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.764
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I 0.698
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.764
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.764
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.778
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.764
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.718
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.737
TCM_007904 Theobroma cacao TCM_007904 I 0.734
TCM_016551 Theobroma cacao TCM_016551 I 0.662
TCM_031294 Theobroma cacao TCM_031294 I 0.695
TCM_030009 Theobroma cacao TCM_030009 I 0.778
TCM_026197 Theobroma cacao TCM_026197 I 0.670
Traes_2DS_49959692B1 Triticum aestivum Traes_2DS_49959692B1 I 0.708
Traes_2AS_FA7059723 Triticum aestivum Traes_2AS_FA7059723 I 0.713
Traes_6BL_5A2DB8F78 Triticum aestivum Traes_6BL_5A2DB8F78 I 0.666
Traes_2DS_49959692B Triticum aestivum Traes_2DS_49959692B I 0.708
Traes_6DL_499F64524 Triticum aestivum Traes_6DL_499F64524 I 0.666
MYB49 Vitis vinifera VIT_19s0014g03820 I 0.691
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.734
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.778
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.737
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.761