Lus10022136.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10022136.g T288043_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.812 0.906
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN

NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.776 0.885
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN

NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.771 0.835
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR

YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.771 0.835
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN

NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.763 0.856
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR

YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.664 0.755
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10022136 Myb 46 92
Lus10022136 Myb 98 144
Lus10022136 Myb 150 194

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.871
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.868
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.867
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.867
Cla022565 Citrullus lanatus Cla022565 I 0.867
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.867
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.865
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.855
mgf008601m Mimulus guttatus mgf008601m I 0.854
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.853
Pm005124 Prunus mume Pm005124 I 0.849
TCM_047091 Theobroma cacao TCM_047091 I 0.848
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.848
MDP0000179225 Malus domestica MDP0000179225 I 0.846
MDP0000295807 Malus domestica MDP0000295807 I 0.839
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.836
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.835
29794.m003447 Ricinus communis 29794.m003447 I 0.835
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.835
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.835
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.830
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.830
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.825
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.822
Cla023357 Citrullus lanatus Cla023357 I 0.822
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.814
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.812
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.811
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.811
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.811
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.811
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.807
OS12G0238000 Oryza sativa OS12G0238000 I 0.805
OB12G16480 Oryza brachyantha OB12G16480 I 0.805
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.805
GLYMA14G21523 Glycine max GLYMA14G21523 I 0.794
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.793
OB01G18340 Oryza brachyantha OB01G18340 I 0.793
Ca_14925 Cicer arietinum Ca_14925 I 0.792
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.791
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.791
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.791
Bo7g115810 Brassica oleracea Bo7g115810 I 0.791
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.790
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.790
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.790
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.790
OBART01G08110 Oryza barthii OBART01G08110 I 0.790
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.786
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.786
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.784
F775_05724 Aegilops tauschii F775_05724 I 0.783
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.781
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.777
PK12011.1 Cannabis sativa PK12011.1 D 0.776
Ca_01884 Cicer arietinum Ca_01884 I 0.772
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.771
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.771
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.771
Pavir.J07395 Panicum virgatum Pavir.J07395 I 0.770
Bo1g010040 Brassica oleracea Bo1g010040 I 0.766
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.766
Bra011376 Brassica rapa Bra011376 I 0.766
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.763
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.763
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.763
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.762
Bo9g171130 Brassica oleracea Bo9g171130 I 0.761
Bra008956 Brassica rapa Bra008956 I 0.761
Bo3g171130 Brassica oleracea Bo3g171130 I 0.759
Bra034531 Brassica rapa Bra034531 I 0.759
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.756
Bo3g007070 Brassica oleracea Bo3g007070 I 0.755
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.755
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.755
Bo3g179620 Brassica oleracea Bo3g179620 I 0.755
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.752
Bra037045 Brassica rapa Bra037045 I 0.750
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.747
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.747
PK22174.1 Cannabis sativa PK22174.1 I 0.742
BRADI2G31887 Brachypodium distachyon BRADI2G31887 I 0.740
mgf006384m Mimulus guttatus mgf006384m I 0.739
Bra006102 Brassica rapa Bra006102 I 0.734
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.724
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.715
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.715
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.708
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.704
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.700
cassava9078.m1 Manihot esculenta cassava9078.m1 I 0.691
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.688
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.688
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.688
OBART05G19200 Oryza barthii OBART05G19200 I 0.688
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.688
Si021484m.g Setaria italica Si021484m.g I 0.682
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.682
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.681
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.679
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.679
Sb09g007370 Sorghum bicolor Sb09g007370 N 0.678
Cla018173 Citrullus lanatus Cla018173 I 0.678
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.676
MYB3R-2 Oryza sativa OS01G0841500 I 0.676
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.676
OB05G26770 Oryza brachyantha OB05G26770 N 0.675
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.675
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.674
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.674
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.674
SELMODRAFT_411844 Selaginella moellendorffii SELMODRAFT_411844 I 0.674
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.674
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.674
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.673
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.673
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.673
Si000842m.g Setaria italica Si000842m.g I 0.673
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.673
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.670
MDP0000219581 Malus domestica MDP0000219581 I 0.670
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.670
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.670
Lus10011687.g Linum usitatissimum Lus10011687.g N 0.669
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.669
OPUNC12G06560 Oryza punctata OPUNC12G06560 N 0.668
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.668
ORGLA05G0166300 Oryza glaberrima ORGLA05G0166300 I 0.666
OS05G0459000 Oryza sativa OS05G0459000 I 0.666
MYB3R-4 Vitis vinifera VIT_04s0008g03790 I 0.664
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.664
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.664
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.664
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.662
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.662
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.661