CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10024938.g
(
Linum usitatissimum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Lus10024938.g
T288065_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.849
0.936
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.811
0.894
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.811
0.894
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.801
0.894
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.801
0.894
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.784
0.809
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.784
0.809
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.782
0.915
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.745
0.830
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS
SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.745
0.830
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.745
0.830
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.745
0.830
AT1G14600
M01268_2.00
Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN
PBM
Lambert et al.(2019)
pTH11557
0.692
0.787
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.681
0.745
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.679
0.766
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN
NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.673
0.745
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.673
0.745
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.673
0.745
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.661
0.702
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.661
0.702
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB
VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.661
0.702
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.661
0.702
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10024938
Myb
247
298
RLRWTPELHESFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Linum usitatissimum
TFs
797 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy