Lus10026611.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10026611.g T288079_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.800 0.914
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.800 0.914
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.774 0.806
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.774 0.806
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.742 0.763
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.742 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10026611 Myb 78 124
Lus10026611 Myb 130 175

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

385 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CBN25334 Caenorhabditis brenneri CBN25334 N 0.000
GH17483 Drosophila grimshawi FBgn0124953 N 0.000
EMIHUDRAFT_107556 Emiliania huxleyi EMIHUDRAFT_107556 N 0.000
Thhalv10015680m.g Eutrema salsugineum Thhalv10015680m.g N 0.000
estExt_fgenesh2_pg.C_390049 Monosiga brevicollis estExt_fgenesh2_pg.C_390049 N 0.000
estExt_fgenesh1_kg.C_340020 Phytophthora capsici estExt_fgenesh1_kg.C_340020 N 0.000
GLOINDRAFT_31865 Rhizophagus irregularis GLOINDRAFT_31865 N 0.000
Sakowv30045438m.g Saccoglossus kowalevskii Sakowv30045438m.g N 0.000