Lus10028264.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10028264.g T288105_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW

WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.698 0.745
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH

DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.698 0.745
AT3G11280
M01075_2.00
Arabidopsis thaliana
NNTTATCNNN

NNNGATAANN
PBM
Sullivan et al.(2014)
pTH7245
0.698 0.777
AT3G11280
M07074_2.00
Arabidopsis thaliana
DWDWDGATAAKRWW

WWYMTTATCHWHWH
Dap-seq
OMalley et al.(2016)
At3g11280_col_a
0.698 0.777
AT3G11280
M07075_2.00
Arabidopsis thaliana
NNWNNDGATAAGRWHDNN

NNHDWYCTTATCHNNWNN
Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a
0.698 0.777
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH

DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.694 0.755
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN

NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.672 0.723
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN

NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.672 0.723
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN

NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.667 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10028264 Myb 123 170

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.821
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.816
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.784
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.784
TCM_042604 Theobroma cacao TCM_042604 I 0.783
29610.m000410 Ricinus communis 29610.m000410 I 0.782
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.775
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.775
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.765
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.762
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.762
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.757
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.754
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.753
Ca_12513 Cicer arietinum Ca_12513 I 0.747
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.746
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.741
Bo9g135730 Brassica oleracea Bo9g135730 I 0.741
Cla004397 Citrullus lanatus Cla004397 I 0.739
PK15104.1 Cannabis sativa PK15104.1 I 0.733
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.730
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.729
Bra002610 Brassica rapa Bra002610 I 0.722
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.722
Pm018878 Prunus mume Pm018878 I 0.716
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.716
Bra009134 Brassica rapa Bra009134 I 0.714
Bo9g176900 Brassica oleracea Bo9g176900 I 0.714
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.710
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.710
Bo3g018460 Brassica oleracea Bo3g018460 I 0.709
Bra006741 Brassica rapa Bra006741 I 0.709
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.703
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.698
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.698
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.698
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.698
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.698
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.698
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.698
Bra034173 Brassica rapa Bra034173 I 0.698
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.696
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.696
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.694
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.694
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.694
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.694
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.693
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.693
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.691
Cla013553 Citrullus lanatus Cla013553 I 0.691
MDP0000277813 Malus domestica MDP0000277813 I 0.690
Thhalv10014370m.g Eutrema salsugineum Thhalv10014370m.g I 0.690
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.689
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.689
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.687
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.687
Bo5g136680 Brassica oleracea Bo5g136680 I 0.687
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.687
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.687
28288.m000014 Ricinus communis 28288.m000014 I 0.686
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.686
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.684
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.684
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.684
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.684
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.683
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.681
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.681
MDP0000221993 Malus domestica MDP0000221993 I 0.681
Pm002536 Prunus mume Pm002536 I 0.681
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.680
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.680
Bo1g141120 Brassica oleracea Bo1g141120 I 0.680
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.680
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.679
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.677
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.677
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.677
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.677
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.677
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.677
Ca_19327 Cicer arietinum Ca_19327 I 0.677
TCM_021750 Theobroma cacao TCM_021750 I 0.677
Bra034853 Brassica rapa Bra034853 I 0.676
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.676
Bra028892 Brassica rapa Bra028892 I 0.675
Bo2g002350 Brassica oleracea Bo2g002350 I 0.675
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.674
Cagra.7888s0001 Capsella grandiflora Cagra.7888s0001 N 0.674
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I 0.674
Carubv10001741m.g Capsella rubella Carubv10001741m.g N 0.674
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.672
PK27213.1 Cannabis sativa PK27213.1 D 0.672
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.669
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.669
29681.m001296 Ricinus communis 29681.m001296 I 0.668
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.668
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.668
Bra017138 Brassica rapa Bra017138 I 0.667
fgenesh1_pg.C_scaffold_6000079 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000079 N 0.667
Bo4g187390 Brassica oleracea Bo4g187390 I 0.667
Bo3g032160 Brassica oleracea Bo3g032160 I 0.667
Bo4g029810 Brassica oleracea Bo4g029810 I 0.667
Bra000038 Brassica rapa Bra000038 I 0.667
Bra005139 Brassica rapa Bra005139 I 0.667
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.667
AT5G01200 Arabidopsis thaliana AT5G01200 N 0.667
Eucgr.G03029 Eucalyptus grandis Eucgr.G03029 I 0.667
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.667
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.667
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.667
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.666
MDP0000142580 Malus domestica MDP0000142580 I 0.666
TCM_041672 Theobroma cacao TCM_041672 I 0.666
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.666
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.664
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.664
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.662
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.662
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.661