CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10038395.g
(
Linum usitatissimum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Lus10038395.g
T288197_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.698
0.796
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10038395
Myb
22
69
KGLWSPDEDERLFHFITSNGHPSWSSVPKLAGLQRCGKSCRLRWLNYL
Lus10038395
Myb
75
120
RGGFTHKEERIIVDAHRMLGNKWAQIAKHLPGRTDNEIKNFWNSYI
Links
Other
Myb/SANT
family TFs
Other
Linum usitatissimum
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10001226.g
Linum usitatissimum
Lus10001226.g
N
0.833
SapurV1A.0122s0490
Salix purpurea
SapurV1A.0122s0490
I
0.716
POPTR_0003s15440
Populus trichocarpa
POPTR_0003s15440
I
0.716
cassava11527.m1
Manihot esculenta
cassava11527.m1
I
0.708
ATY53
Arabidopsis thaliana
AT3G12720
D
0.698
ATY53
Arabidopsis lyrata
scaffold_301452.1
I
0.698
Bostr.3640s0047
Boechera stricta
Bostr.3640s0047
I
0.698
Cagra.5641s0037
Capsella grandiflora
Cagra.5641s0037
I
0.698
Carubv10015099m.g
Capsella rubella
Carubv10015099m.g
I
0.698
POPTR_0008s08110
Populus trichocarpa
POPTR_0008s08110
I
0.698
cassava33147.m1
Manihot esculenta
cassava33147.m1
I
0.694
POPTR_0001s12240
Populus trichocarpa
POPTR_0001s12240
I
0.693
TCM_005977
Theobroma cacao
TCM_005977
I
0.692
orange1.1g036087m.g
Citrus sinensis
orange1.1g036087m.g
I
0.692
Ciclev10006752m.g
Citrus clementina
Ciclev10006752m.g
I
0.692
27956.m000359
Ricinus communis
27956.m000359
I
0.686
SapurV1A.0236s0090
Salix purpurea
SapurV1A.0236s0090
I
0.685
30125.m001257
Ricinus communis
30125.m001257
I
0.683
LjT35F06.10.nd
Lotus japonicus
LjT35F06.10.nd
I
0.683
cassava26068.m1
Manihot esculenta
cassava26068.m1
I
0.682
Eucgr.E04323
Eucalyptus grandis
Eucgr.E04323
I
0.682
Ciclev10018009m.g
Citrus clementina
Ciclev10018009m.g
I
0.681
orange1.1g039070m.g
Citrus sinensis
orange1.1g039070m.g
I
0.681
Pm010847
Prunus mume
Pm010847
I
0.675
PRUPE_ppa026618mg
Prunus persica
PRUPE_ppa026618mg
I
0.675
Thhalv10022066m.g
Eutrema salsugineum
Thhalv10022066m.g
I
0.674
Gorai.004G268300
Gossypium raimondii
Gorai.004G268300
I
0.674
BRADI1G61397
Brachypodium distachyon
BRADI1G61397
I
0.674
Pm010927
Prunus mume
Pm010927
I
0.674
GLYMA08G17371
Glycine max
GLYMA08G17371
I
0.674
TCM_033645
Theobroma cacao
TCM_033645
I
0.674
30054.m000809
Ricinus communis
30054.m000809
I
0.672
MDP0000226667
Malus domestica
MDP0000226667
I
0.669
SapurV1A.0149s0490
Salix purpurea
SapurV1A.0149s0490
I
0.668
SapurV1A.4138s0010
Salix purpurea
SapurV1A.4138s0010
I
0.668
Bra039339
Brassica rapa
Bra039339
I
0.668
Bo1g138990
Brassica oleracea
Bo1g138990
I
0.668
Bo5g133210
Brassica oleracea
Bo5g133210
I
0.665
Bra034738
Brassica rapa
Bra034738
I
0.665
MTR_2g064160
Medicago truncatula
MTR_2g064160
I
0.665
gene19934-v1.0-hybrid
Fragaria vesca
gene19934-v1.0-hybrid
I
0.664
GSMUA_Achr9G11190_001
Musa acuminata
GSMUA_Achr9G11190_001
I
0.663
Cagra.10702s0006
Capsella grandiflora
Cagra.10702s0006
I
0.661
Carubv10020714m.g
Capsella rubella
Carubv10020714m.g
I
0.661