Lus10039743.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10039743.g T288220_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.800 0.892
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.793 0.935
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.793 0.914
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.793 0.914
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.699 0.839
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.699 0.839
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.663 0.731
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.663 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10039743 Myb 14 61
Lus10039743 Myb 67 112

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.858
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.858
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.858
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.858
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.858
POPTR_0019s14070 Populus trichocarpa POPTR_0019s14070 I 0.850
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.846
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.838
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.838
Bo1g051220 Brassica oleracea Bo1g051220 I 0.836
TCM_007904 Theobroma cacao TCM_007904 I 0.831
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.828
29983.m003281 Ricinus communis 29983.m003281 I 0.828
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.828
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.828
MDP0000710259 Malus domestica MDP0000710259 I 0.821
MDP0000468201 Malus domestica MDP0000468201 I 0.821
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.818
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.814
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.807
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.807
Cla007838 Citrullus lanatus Cla007838 I 0.807
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.806
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.806
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.806
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.806
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.806
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.806
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.806
Ca_00232 Cicer arietinum Ca_00232 I 0.806
Bo7g111870 Brassica oleracea Bo7g111870 I 0.806
Bra024224 Brassica rapa Bra024224 I 0.806
Bra026281 Brassica rapa Bra026281 I 0.806
SapurV1A.0417s0210 Salix purpurea SapurV1A.0417s0210 I 0.804
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.802
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.800
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.797
TCM_030009 Theobroma cacao TCM_030009 I 0.793
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.793
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.793
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.793
mgf018114m Mimulus guttatus mgf018114m I 0.793
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.793
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.793
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.793
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.793
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.793
MDP0000492221 Malus domestica MDP0000492221 I 0.793
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.793
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.793
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.793
Cla001360 Citrullus lanatus Cla001360 I 0.793
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.793
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.793
Pm009892 Prunus mume Pm009892 I 0.793
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.793
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.790
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.790
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.790
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.789
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.787
mgf025298m Mimulus guttatus mgf025298m I 0.787
mgf023669m Mimulus guttatus mgf023669m I 0.787
mgf026502m Mimulus guttatus mgf026502m I 0.787
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.784
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.784
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.782
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.781
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.781
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.780
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.778
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.778
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.778
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.778
Si030273m.g Setaria italica Si030273m.g I 0.778
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.778
BRADI1G24887 Brachypodium distachyon BRADI1G24887 I 0.778
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.777
evm.TU.supercontig_34.69 Carica papaya evm.TU.supercontig_34.69 I 0.777
GLYMA06G45460 Glycine max GLYMA06G45460 I 0.775
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.774
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.773
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.772
GLYMA12G11600 Glycine max GLYMA12G11600 I 0.771
PRUPE_ppa016708mg Prunus persica PRUPE_ppa016708mg I 0.771
Pm015309 Prunus mume Pm015309 I 0.771
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.768
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.768
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.768
Ca_22021 Cicer arietinum Ca_22021 I 0.765
Bra029553 Brassica rapa Bra029553 I 0.763
Bo9g076410 Brassica oleracea Bo9g076410 I 0.763
Bo3g162580 Brassica oleracea Bo3g162580 I 0.761
Bra020892 Brassica rapa Bra020892 I 0.761
Cagra.2455s0004 Capsella grandiflora Cagra.2455s0004 I 0.761
ATMYB102 Arabidopsis lyrata fgenesh2_kg.7__2173__AT4G21440.1 I 0.761
Thhalv10027571m.g Eutrema salsugineum Thhalv10027571m.g I 0.761
Bra038774 Brassica rapa Bra038774 I 0.761
Carubv10004873m.g Capsella rubella Carubv10004873m.g I 0.761
ATMYB102 Arabidopsis thaliana AT4G21440 I 0.761
gene01992-v1.0-hybrid Fragaria vesca gene01992-v1.0-hybrid I 0.759
Cla019747 Citrullus lanatus Cla019747 I 0.759
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.759
Bo7g107420 Brassica oleracea Bo7g107420 I 0.757
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.754
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.754
OS07G0558100 Oryza sativa OS07G0558100 I 0.754
MLOC_62436 Hordeum vulgare MLOC_62436 I 0.754
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.754
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.754
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.754
OBART07G18450 Oryza barthii OBART07G18450 I 0.754
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.754
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.754
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.754
Traes_2AS_FA7059723 Triticum aestivum Traes_2AS_FA7059723 I 0.754
Bostr.10689s0089 Boechera stricta Bostr.10689s0089 I 0.752
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.751
Traes_2DS_49959692B Triticum aestivum Traes_2DS_49959692B I 0.750
Traes_2DS_49959692B1 Triticum aestivum Traes_2DS_49959692B1 I 0.750
Ca_14119 Cicer arietinum Ca_14119 I 0.750
F775_02918 Aegilops tauschii F775_02918 I 0.750
MTR_2g089620 Medicago truncatula MTR_2g089620 I 0.750
Bo1g024170 Brassica oleracea Bo1g024170 I 0.744
Bra013526 Brassica rapa Bra013526 I 0.744
GLYMA13G37820 Glycine max GLYMA13G37820 I 0.742
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.738
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.732
AMTR_s00003p00271440 Amborella trichopoda AMTR_s00003p00271440 I 0.730
OB07G24240 Oryza brachyantha OB07G24240 I 0.729
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.727
GLYMA12G32610 Glycine max GLYMA12G32610 I 0.725
Aquca_038_00198 Aquilegia coerulea Aquca_038_00198 I 0.715
Lus10018418.g Linum usitatissimum Lus10018418.g I 0.712
Pavir.Gb00736 Panicum virgatum Pavir.Gb00736 I 0.712
Pavir.Ga01101 Panicum virgatum Pavir.Ga01101 I 0.712
POPTR_0011s12750 Populus trichocarpa POPTR_0011s12750 I 0.703
Gorai.012G132200 Gossypium raimondii Gorai.012G132200 I 0.702
MYB49 Vitis vinifera VIT_19s0014g03820 I 0.701
Bostr.26833s0846 Boechera stricta Bostr.26833s0846 I 0.699
Bo3g022210 Brassica oleracea Bo3g022210 I 0.699
Cagra.1629s0007 Capsella grandiflora Cagra.1629s0007 I 0.699
fgenesh1_pm.C_scaffold_8001114 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001114 I 0.699
Bra029033 Brassica rapa Bra029033 I 0.699
fgenesh1_pg.C_scaffold_8001466 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001466 I 0.699
MYB49 Arabidopsis thaliana AT5G54230 D 0.699
Thhalv10014125m.g Eutrema salsugineum Thhalv10014125m.g I 0.699
Carubv10026801m.g Capsella rubella Carubv10026801m.g I 0.699
GLYMA02G12242 Glycine max GLYMA02G12242 I 0.698
GLYMA13G09010 Glycine max GLYMA13G09010 I 0.698
PGSC0003DMG400011243 Solanum tuberosum PGSC0003DMG400011243 I 0.692
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.691
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.690
Lus10002593.g Linum usitatissimum Lus10002593.g I 0.689
Traes_2DL_5A0300CE0 Triticum aestivum Traes_2DL_5A0300CE0 I 0.687
MLOC_68698 Hordeum vulgare MLOC_68698 I 0.687
Traes_2BL_79F1B50DF Triticum aestivum Traes_2BL_79F1B50DF I 0.687
Traes_2AL_41B71F83C Triticum aestivum Traes_2AL_41B71F83C I 0.687
Cagra.1671s0249 Capsella grandiflora Cagra.1671s0249 I 0.686
Cla014359 Citrullus lanatus Cla014359 I 0.682
Gorai.003G039500 Gossypium raimondii Gorai.003G039500 I 0.682
Ciclev10003958m.g Citrus clementina Ciclev10003958m.g I 0.682
orange1.1g037998m.g Citrus sinensis orange1.1g037998m.g I 0.682
TCM_004046 Theobroma cacao TCM_004046 I 0.681
Cla006077 Citrullus lanatus Cla006077 I 0.681
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I 0.681
SapurV1A.0840s0010 Salix purpurea SapurV1A.0840s0010 I 0.681
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I 0.681
POPTR_0001s41920 Populus trichocarpa POPTR_0001s41920 I 0.681
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I 0.681
Bostr.25219s0339 Boechera stricta Bostr.25219s0339 I 0.679
SapurV1A.0495s0050 Salix purpurea SapurV1A.0495s0050 I 0.678
SapurV1A.4146s0010 Salix purpurea SapurV1A.4146s0010 I 0.678
Cucsa.388490 Cucumis sativus Cucsa.388490 I 0.677
TCM_031294 Theobroma cacao TCM_031294 I 0.677
GSMUA_Achr6G29310_001 Musa acuminata GSMUA_Achr6G29310_001 I 0.676
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.675
evm.TU.supercontig_12.22 Carica papaya evm.TU.supercontig_12.22 I 0.674
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.674
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.673
MDP0000623034 Malus domestica MDP0000623034 I 0.673
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I 0.673
MDP0000228930 Malus domestica MDP0000228930 I 0.673
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I 0.670
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.670
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I 0.670
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.670
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.669
MDP0000144751 Malus domestica MDP0000144751 I 0.668
GSMUA_Achr9G14850_001 Musa acuminata GSMUA_Achr9G14850_001 I 0.667
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.667
Aquca_017_00716 Aquilegia coerulea Aquca_017_00716 I 0.667
Carubv10006864m.g Capsella rubella Carubv10006864m.g I 0.666
MDP0000289283 Malus domestica MDP0000289283 I 0.666
Lus10033889.g Linum usitatissimum Lus10033889.g I 0.666
Cagra.3356s0071 Capsella grandiflora Cagra.3356s0071 I 0.666
Lus10003557.g Linum usitatissimum Lus10003557.g I 0.666
Traes_7BS_7E91DE546 Triticum aestivum Traes_7BS_7E91DE546 I 0.665
TCM_011658 Theobroma cacao TCM_011658 I 0.665
F775_06136 Aegilops tauschii F775_06136 I 0.665
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.665
Traes_7DS_469ED3135 Triticum aestivum Traes_7DS_469ED3135 I 0.665
GLYMA12G34650 Glycine max GLYMA12G34650 I 0.664
Gorai.013G088400 Gossypium raimondii Gorai.013G088400 I 0.664
GLYMA13G35810 Glycine max GLYMA13G35810 I 0.664
MYB39 Arabidopsis lyrata fgenesh2_kg.7__2528__AT4G17785.1 I 0.663
MYB39 Arabidopsis thaliana AT4G17785 D 0.663
Bo1g017860 Brassica oleracea Bo1g017860 I 0.663
Bra040181 Brassica rapa Bra040181 I 0.663
Thhalv10026921m.g Eutrema salsugineum Thhalv10026921m.g I 0.663
MTR_2g067420 Medicago truncatula MTR_2g067420 I 0.663
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.663
Bo8g105490 Brassica oleracea Bo8g105490 I 0.662
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.662
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.662
Bra026720 Brassica rapa Bra026720 I 0.662
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.662
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.662
SapurV1A.0403s0220 Salix purpurea SapurV1A.0403s0220 I 0.661
TCM_001102 Theobroma cacao TCM_001102 I 0.661
GLYMA04G11040 Glycine max GLYMA04G11040 I 0.661
GLYMA06G10840 Glycine max GLYMA06G10840 I 0.661
TCM_034902 Theobroma cacao TCM_034902 I 0.661
Solyc04g056310.2 Solanum lycopersicum Solyc04g056310.2 I 0.661
SapurV1A.2488s0010 Salix purpurea SapurV1A.2488s0010 I 0.661
MDP0000320772 Malus domestica MDP0000320772 I 0.661
Ciclev10026023m.g Citrus clementina Ciclev10026023m.g I 0.661
MTR_3g074520 Medicago truncatula MTR_3g074520 I 0.661
Gorai.007G236800 Gossypium raimondii Gorai.007G236800 I 0.661
Eucgr.B00023 Eucalyptus grandis Eucgr.B00023 I 0.661
gene16287-v1.0-hybrid Fragaria vesca gene16287-v1.0-hybrid I 0.661
Eucgr.I00442 Eucalyptus grandis Eucgr.I00442 I 0.661
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I 0.661
Gorai.009G281000 Gossypium raimondii Gorai.009G281000 I 0.661
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.661
POPTR_0005s07590 Populus trichocarpa POPTR_0005s07590 I 0.661
orange1.1g045434m.g Citrus sinensis orange1.1g045434m.g I 0.661
Pm002011 Prunus mume Pm002011 I 0.661
AMTR_s00038p00183620 Amborella trichopoda AMTR_s00038p00183620 I 0.661
MDP0000302984 Malus domestica MDP0000302984 I 0.661
e_gw1.389.9.1 Physcomitrella patens e_gw1.389.9.1 I 0.661
MDP0000228252 Malus domestica MDP0000228252 I 0.661
PRUPE_ppa019923mg Prunus persica PRUPE_ppa019923mg I 0.661