CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10040111.g
(
Linum usitatissimum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Lus10040111.g
T288228_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.757
0.787
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.757
0.787
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.715
0.723
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.715
0.723
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.715
0.723
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.715
0.723
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.704
0.766
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.670
0.745
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10040111
Myb
5
57
KQKWTAEEEEALRAGIAKHGTGKWKLIQQDPEFNPYLSTRSNIDLKDKWRNII
Links
Other
Myb/SANT
family TFs
Other
Linum usitatissimum
TFs
176 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.909
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.870
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.840
29912.m005376
Ricinus communis
29912.m005376
I
0.840
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.840
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.828
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.827
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.822
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.818
Pm027209
Prunus mume
Pm027209
I
0.806
PK00568.1
Cannabis sativa
PK00568.1
I
0.806
MDP0000265359
Malus domestica
MDP0000265359
I
0.806
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.806
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.806
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.806
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.806
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.806
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.800
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.759
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.759
TCM_000807
Theobroma cacao
TCM_000807
I
0.759
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.759
29661.m000926
Ricinus communis
29661.m000926
I
0.759
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.759
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.759
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.757
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.757
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.757
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.749
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.749
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.749
mgf011386m
Mimulus guttatus
mgf011386m
I
0.741
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.735
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.735
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.735
Bra016037
Brassica rapa
Bra016037
I
0.729
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.729
Thhalv10010562m.g
Eutrema salsugineum
Thhalv10010562m.g
I
0.725
TRB3
Arabidopsis lyrata
fgenesh2_kg.5__1337__AT3G49850.1
I
0.725
Bo1g081300
Brassica oleracea
Bo1g081300
I
0.725
Carubv10017722m.g
Capsella rubella
Carubv10017722m.g
I
0.725
Carubv10026874m.g
Capsella rubella
Carubv10026874m.g
I
0.725
POPTR_0007s14920
Populus trichocarpa
POPTR_0007s14920
I
0.725
Bra029978
Brassica rapa
Bra029978
I
0.725
Cagra.4491s0006
Capsella grandiflora
Cagra.4491s0006
I
0.725
cassava37744.valid.m1
Manihot esculenta
cassava37744.valid.m1
I
0.725
Thhalv10004691m.g
Eutrema salsugineum
Thhalv10004691m.g
I
0.725
Cagra.0342s0046
Capsella grandiflora
Cagra.0342s0046
I
0.725
Bostr.6864s0256
Boechera stricta
Bostr.6864s0256
I
0.725
Bostr.0568s0184
Boechera stricta
Bostr.0568s0184
I
0.725
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.723
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.723
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.723
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.723
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.721
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.721
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.721
OS01G0589300
Oryza sativa
OS01G0589300
I
0.721
OBART01G21150
Oryza barthii
OBART01G21150
I
0.721
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.721
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.721
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.721
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.721
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.721
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.721
SapurV1A.1368s0050
Salix purpurea
SapurV1A.1368s0050
I
0.720
SapurV1A.0235s0100
Salix purpurea
SapurV1A.0235s0100
I
0.720
Lus10011546.g
Linum usitatissimum
Lus10011546.g
I
0.720
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.720
Bra030894
Brassica rapa
Bra030894
I
0.720
Lus10019260.g
Linum usitatissimum
Lus10019260.g
I
0.720
POPTR_0014s01010
Populus trichocarpa
POPTR_0014s01010
I
0.720
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.717
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.717
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.717
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.717
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.717
TRB2
Arabidopsis thaliana
AT5G67580
D
0.715
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.715
TRB2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002157
I
0.715
mgf007122m
Mimulus guttatus
mgf007122m
I
0.712
Lus10025203.g
Linum usitatissimum
Lus10025203.g
I
0.710
Lus10012092.g
Linum usitatissimum
Lus10012092.g
I
0.710
OBART01G28260
Oryza barthii
OBART01G28260
I
0.704
OB01G37330
Oryza brachyantha
OB01G37330
I
0.704
Thhalv10012087m.g
Eutrema salsugineum
Thhalv10012087m.g
I
0.704
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.704
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.704
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.704
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.704
Si002467m.g
Setaria italica
Si002467m.g
I
0.704
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.704
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.704
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.704
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.704
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.704
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.704
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.704
OS01G0708000
Oryza sativa
OS01G0708000
D
0.704
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.704
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.704
Bra030992
Brassica rapa
Bra030992
I
0.701
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.701
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.701
Bra016598
Brassica rapa
Bra016598
I
0.701
TCM_029078
Theobroma cacao
TCM_029078
I
0.696
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.696
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.696
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.696
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.696
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.696
29706.m001328
Ricinus communis
29706.m001328
I
0.696
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.696
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.696
OB01G30760
Oryza brachyantha
OB01G30760
I
0.687
TRB3
Arabidopsis thaliana
AT3G49850
I
0.686
Bo3g096520
Brassica oleracea
Bo3g096520
I
0.686
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.686
Bra037839
Brassica rapa
Bra037839
I
0.686
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.686
Pm013309
Prunus mume
Pm013309
I
0.686
Bra037837
Brassica rapa
Bra037837
I
0.686
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.686
Bo9g019040
Brassica oleracea
Bo9g019040
I
0.686
Bra024438
Brassica rapa
Bra024438
I
0.686
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.686
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.686
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.685
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.685
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.685
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.685
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.685
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.685
Ca_10058
Cicer arietinum
Ca_10058
I
0.683
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.683
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.683
Bra025967
Brassica rapa
Bra025967
I
0.683
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.683
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.681
Ca_02722
Cicer arietinum
Ca_02722
I
0.678
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.676
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.676
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.670
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.670
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.670
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.670
PK06103.1
Cannabis sativa
PK06103.1
D
0.670
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.670
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.670
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.670
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.670
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.670
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.670
Cla014248
Citrullus lanatus
Cla014248
I
0.670
Ca_02232
Cicer arietinum
Ca_02232
I
0.670
Ca_09355
Cicer arietinum
Ca_09355
I
0.670
MDP0000239354
Malus domestica
MDP0000239354
I
0.670
Pm002374
Prunus mume
Pm002374
I
0.670
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.669
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.669
Bostr.7128s0053
Boechera stricta
Bostr.7128s0053
I
0.667
Cagra.1262s0035
Capsella grandiflora
Cagra.1262s0035
I
0.667
Carubv10009763m.g
Capsella rubella
Carubv10009763m.g
I
0.667
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.663
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.663
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.663
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.663
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.663
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.663
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.663
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.663
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.663
Pm021139
Prunus mume
Pm021139
I
0.663
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.663
29812.m000204
Ricinus communis
29812.m000204
I
0.663
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.663