MDP0000255630 (Malus domestica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 MDP0000255630 T288499_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN

NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.734 0.860
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN

NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.734 0.860
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN

NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.689 0.839
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW

WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.686 0.849
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH

DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.686 0.849
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000255630 Myb 135 182

Links

Other Myb/SANT family TFs
Other Malus domestica TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000292581 Malus domestica MDP0000292581 I 0.909
MDP0000243328 Malus domestica MDP0000243328 I 0.909
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.808
GLYMA18G07250 Glycine max GLYMA18G07250 I 0.779
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.775
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.772
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.772
Pm000529 Prunus mume Pm000529 I 0.760
29681.m001296 Ricinus communis 29681.m001296 I 0.758
PRUPE_ppa009072mg Prunus persica PRUPE_ppa009072mg I 0.751
TCM_041672 Theobroma cacao TCM_041672 I 0.749
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.747
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.746
Ca_14247 Cicer arietinum Ca_14247 I 0.739
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.739
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.739
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.739
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.735
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.734
PK27213.1 Cannabis sativa PK27213.1 D 0.734
Eucgr.J01940 Eucalyptus grandis Eucgr.J01940 I 0.733
Cla013553 Citrullus lanatus Cla013553 I 0.733
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.732
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.729
Ca_15603 Cicer arietinum Ca_15603 I 0.729
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.728
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.722
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.719
mgf022442m Mimulus guttatus mgf022442m I 0.714
Bra002610 Brassica rapa Bra002610 I 0.710
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.710
Cla018243 Citrullus lanatus Cla018243 I 0.708
Bo3g018460 Brassica oleracea Bo3g018460 I 0.697
Bra006741 Brassica rapa Bra006741 I 0.697
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.695
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.694
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.693
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.693
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.690
PK27693.1 Cannabis sativa PK27693.1 D 0.689
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.686
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.686
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.686
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.686
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.686
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.683
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.683
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.683
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.683
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.682
Cla013899 Citrullus lanatus Cla013899 N 0.681
Cucsa.364590 Cucumis sativus Cucsa.364590 N 0.680
GSMUA_Achr10G02290_001 Musa acuminata GSMUA_Achr10G02290_001 I 0.680
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.679
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.679
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.679
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.676
Pavir.J16113 Panicum virgatum Pavir.J16113 I 0.675
GSMUA_Achr6G33620_001 Musa acuminata GSMUA_Achr6G33620_001 N 0.674
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.673
Bo9g135730 Brassica oleracea Bo9g135730 I 0.670
TCM_042604 Theobroma cacao TCM_042604 I 0.670
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.669
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.669
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.669
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.669
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.668
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.663
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.663
TCM_021750 Theobroma cacao TCM_021750 I 0.663
MDP0000142580 Malus domestica MDP0000142580 I 0.663
MDP0000221993 Malus domestica MDP0000221993 I 0.663
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I 0.663