CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000578193
(
Malus domestica
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
MDP0000578193
T288649_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WER
M11047_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.776
0.849
WER
M11048_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.776
0.849
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.714
0.839
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000578193
Myb
10
57
KGLWTVEEDRILMDYIREHGKGKWNRVNKVTGLKRCGKSCRLRWMNYL
MDP0000578193
Myb
63
108
RGDFSEEEDDLIIRLHKLLGNRWSLIAGRVPGRTDNQVKNHWNTHL
Links
Other
Myb/SANT
family TFs
Other
Malus domestica
TFs
96 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa010908mg
Prunus persica
PRUPE_ppa010908mg
I
0.873
Pm024725
Prunus mume
Pm024725
I
0.867
MDP0000650225
Malus domestica
MDP0000650225
I
0.862
VIT_17s0000g08480
Vitis vinifera
VIT_17s0000g08480
I
0.857
cassava26193.m1
Manihot esculenta
cassava26193.m1
I
0.849
TCM_012057
Theobroma cacao
TCM_012057
I
0.843
evm.TU.supercontig_124.57
Carica papaya
evm.TU.supercontig_124.57
I
0.813
SapurV1A.1178s0050
Salix purpurea
SapurV1A.1178s0050
I
0.811
POPTR_0012s08190
Populus trichocarpa
POPTR_0012s08190
I
0.806
Eucgr.B00373
Eucalyptus grandis
Eucgr.B00373
I
0.805
Gorai.007G001800
Gossypium raimondii
Gorai.007G001800
I
0.793
Eucgr.J02212
Eucalyptus grandis
Eucgr.J02212
I
0.793
SapurV1A.1404s0020
Salix purpurea
SapurV1A.1404s0020
I
0.792
POPTR_0015s08680
Populus trichocarpa
POPTR_0015s08680
I
0.789
gene32181-v1.0-hybrid
Fragaria vesca
gene32181-v1.0-hybrid
I
0.784
Carubv10001990m.g
Capsella rubella
Carubv10001990m.g
I
0.776
MDP0000266683
Malus domestica
MDP0000266683
I
0.776
WER
Arabidopsis thaliana
AT5G14750
D
0.776
Thhalv10014715m.g
Eutrema salsugineum
Thhalv10014715m.g
I
0.776
Bo2g012170
Brassica oleracea
Bo2g012170
I
0.776
Bostr.2902s0211
Boechera stricta
Bostr.2902s0211
I
0.776
Cagra.3166s0078
Capsella grandiflora
Cagra.3166s0078
I
0.776
WER
Arabidopsis lyrata
fgenesh2_kg.6__1454__AT5G14750.1
I
0.776
Aquca_002_00170
Aquilegia coerulea
Aquca_002_00170
I
0.775
VIT_14s0066g01220
Vitis vinifera
VIT_14s0066g01220
I
0.774
Aquca_025_00333
Aquilegia coerulea
Aquca_025_00333
I
0.769
LjT16O05.150.nd
Lotus japonicus
LjT16O05.150.nd
I
0.764
Thhalv10005428m.g
Eutrema salsugineum
Thhalv10005428m.g
I
0.764
Bo9g165670
Brassica oleracea
Bo9g165670
I
0.759
Bra008740
Brassica rapa
Bra008740
I
0.759
TCM_016886
Theobroma cacao
TCM_016886
I
0.756
Bostr.1460s0063
Boechera stricta
Bostr.1460s0063
I
0.753
Bra025311
Brassica rapa
Bra025311
I
0.748
Bra023486
Brassica rapa
Bra023486
I
0.740
Bo7g090950
Brassica oleracea
Bo7g090950
I
0.737
POPTR_0015s08700
Populus trichocarpa
POPTR_0015s08700
I
0.735
Eucgr.I01791
Eucalyptus grandis
Eucgr.I01791
I
0.734
MDP0000537324
Malus domestica
MDP0000537324
I
0.729
Gorai.012G061800
Gossypium raimondii
Gorai.012G061800
I
0.718
Cagra.4961s0006
Capsella grandiflora
Cagra.4961s0006
I
0.716
Carubv10018791m.g
Capsella rubella
Carubv10018791m.g
I
0.716
MDP0000199965
Malus domestica
MDP0000199965
I
0.716
GL1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5000559
I
0.716
GL1
Arabidopsis thaliana
AT3G27920
I
0.716
Ciclev10032713m.g
Citrus clementina
Ciclev10032713m.g
I
0.715
orange1.1g047269m.g
Citrus sinensis
orange1.1g047269m.g
I
0.715
Cagra.3160s0003
Capsella grandiflora
Cagra.3160s0003
I
0.714
MYB23
Arabidopsis thaliana
AT5G40330
D
0.714
Carubv10005698m.g
Capsella rubella
Carubv10005698m.g
I
0.714
Thhalv10028340m.g
Eutrema salsugineum
Thhalv10028340m.g
I
0.714
Bra025589
Brassica rapa
Bra025589
I
0.714
Bostr.7200s0005
Boechera stricta
Bostr.7200s0005
I
0.714
cassava27350.m1
Manihot esculenta
cassava27350.m1
I
0.714
VIT_01s0127g00730
Vitis vinifera
VIT_01s0127g00730
I
0.712
MDP0000164048
Malus domestica
MDP0000164048
I
0.709
Ciclev10017556m.g
Citrus clementina
Ciclev10017556m.g
I
0.700
Pm006678
Prunus mume
Pm006678
I
0.699
PRUPE_ppa014884mg
Prunus persica
PRUPE_ppa014884mg
I
0.699
evm.TU.supercontig_126.33
Carica papaya
evm.TU.supercontig_126.33
I
0.698
Bostr.0556s0467
Boechera stricta
Bostr.0556s0467
I
0.692
TCM_010360
Theobroma cacao
TCM_010360
I
0.691
SapurV1A.1178s0040
Salix purpurea
SapurV1A.1178s0040
N
0.690
PDK_20s1716541g001
Phoenix dactylifera
PDK_20s1716541g001
I
0.689
Pm027045
Prunus mume
Pm027045
I
0.689
AMTR_s00024p00224470
Amborella trichopoda
AMTR_s00024p00224470
I
0.681
AMTR_s00024p00224850
Amborella trichopoda
AMTR_s00024p00224850
I
0.680
cassava7672.valid.m1
Manihot esculenta
cassava7672.valid.m1
I
0.677
Eucgr.C00721
Eucalyptus grandis
Eucgr.C00721
I
0.677
Bra039065
Brassica rapa
Bra039065
I
0.677
GSMUA_Achr8G22690_001
Musa acuminata
GSMUA_Achr8G22690_001
I
0.677
TCM_000535
Theobroma cacao
TCM_000535
I
0.675
TCM_037377
Theobroma cacao
TCM_037377
I
0.673
Solyc12g049300.1
Solanum lycopersicum
Solyc12g049300.1
I
0.673
VIT_11s0016g01310
Vitis vinifera
VIT_11s0016g01310
I
0.673
Si038905m.g
Setaria italica
Si038905m.g
I
0.673
gene15386-v1.0-hybrid
Fragaria vesca
gene15386-v1.0-hybrid
I
0.671
Ciclev10009286m.g
Citrus clementina
Ciclev10009286m.g
I
0.671
Gorai.001G020600
Gossypium raimondii
Gorai.001G020600
I
0.671
GSMUA_Achr9G16040_001
Musa acuminata
GSMUA_Achr9G16040_001
I
0.670
GLYMA16G00931
Glycine max
GLYMA16G00931
I
0.670
Eucgr.B03324
Eucalyptus grandis
Eucgr.B03324
N
0.670
orange1.1g025602m.g
Citrus sinensis
orange1.1g025602m.g
I
0.670
Eucgr.C02096
Eucalyptus grandis
Eucgr.C02096
I
0.670
GSMUA_Achr3G07940_001
Musa acuminata
GSMUA_Achr3G07940_001
I
0.669
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.669
Eucgr.C00724
Eucalyptus grandis
Eucgr.C00724
I
0.669
gene15390-v1.0-hybrid
Fragaria vesca
gene15390-v1.0-hybrid
I
0.669
TCM_004509
Theobroma cacao
TCM_004509
I
0.669
AMTR_s00024p00224180
Amborella trichopoda
AMTR_s00024p00224180
I
0.669
Gorai.001G015200
Gossypium raimondii
Gorai.001G015200
I
0.667
AMTR_s00024p00225650
Amborella trichopoda
AMTR_s00024p00225650
N
0.664
LjSGA_029658.1
Lotus japonicus
LjSGA_029658.1
I
0.663
MTR_4g125520
Medicago truncatula
MTR_4g125520
I
0.663
VIT_04s0008g01820
Vitis vinifera
VIT_04s0008g01820
I
0.662
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.661
GLYMA07G04240
Glycine max
GLYMA07G04240
I
0.661