orange1.1g009402m.g (Citrus sinensis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 orange1.1g009402m.g T288771_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.781 0.886
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.698 0.786
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.693 0.743
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.693 0.743
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.675 0.764
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g009391m Myb 60 106
orange1.1g009391m Myb 112 158
orange1.1g009391m Myb 164 209
orange1.1g009402m Myb 60 106
orange1.1g009402m Myb 112 158
orange1.1g009402m Myb 164 209
orange1.1g009430m Myb 60 106
orange1.1g009430m Myb 112 158
orange1.1g009430m Myb 164 209
orange1.1g009439m Myb 60 106
orange1.1g009439m Myb 112 158
orange1.1g009439m Myb 164 209

Links

Other Myb/SANT family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action