CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g036215m.g
(
Citrus sinensis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
orange1.1g036215m.g
T288875_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.805
0.925
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY
RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.680
0.731
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.680
0.731
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.672
0.699
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.662
0.667
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.661
0.731
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g036215m
Myb
27
74
KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYL
orange1.1g036215m
Myb
80
125
RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRL
Links
Other
Myb/SANT
family TFs
Other
Citrus sinensis
TFs
593 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy