Pavir.Aa00960 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Aa00960 T288967_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN

NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.836 0.804
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH

DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.836 0.804
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN

NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.836 0.804
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.836 0.804
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN

NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.836 0.804
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT

AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.818 0.848
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.818 0.848
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN

NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.809 0.804
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.782 0.761
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN

NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.763 0.739
CCA1
M11039_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.763 0.739
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.722 0.739
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.722 0.739
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.722 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00960.1.p Myb 49 94

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

285 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL003602 Aedes aegypti AAEL003602 N 0.000
Alligator_sinensis_CCG009248.1 Alligator sinensis Alligator_sinensis_CCG009248.1 N 0.000
PRDM8 Anolis carolinensis ENSACAG00000010106 N 0.000
AALB005765 Anopheles albimanus AALB005765 N 0.000
AARA007771 Anopheles arabiensis AARA007771 N 0.000
AATE006171 Anopheles atroparvus AATE006171 N 0.000
ACHR001790 Anopheles christyi ACHR001790 N 0.000
ACUA006984 Anopheles culicifacies ACUA006984 N 0.000
ADIR008055 Anopheles dirus ADIR008055 N 0.000
AEPI001699 Anopheles epiroticus AEPI001699 N 0.000
AFAF012484 Anopheles farauti AFAF012484 N 0.000
AFUN008026 Anopheles funestus AFUN008026 N 0.000
AGAP007109 Anopheles gambiae AGAP007109 N 0.000
AMAM024265 Anopheles maculatus AMAM024265 N 0.000
AMEC009079 Anopheles melas AMEC009079 N 0.000
AMEC019433 Anopheles melas AMEC019433 N 0.000
AMEM014597 Anopheles merus AMEM014597 N 0.000
AMIN011248 Anopheles minimus AMIN011248 N 0.000
AQUA002036 Anopheles quadriannulatus AQUA002036 N 0.000
ASIS021384 Anopheles sinensis ASIS021384 N 0.000
ASTEI06883 Anopheles stephensi ASTEI06883 N 0.000
ENSAMXG00000020060 Astyanax mexicanus ENSAMXG00000020060 N 0.000
BGIBMGA012741 Bombyx mori BGIBMGA012741 N 0.000
fgenesh2_pg.scaffold_282000018 Branchiostoma floridae fgenesh2_pg.scaffold_282000018 N 0.000
PRDM8 Callithrix jacchus ENSCJAG00000015064 N 0.000
PRDM8 Canis familiaris ENSCAFG00000008881 N 0.000
CapteG221467 Capitella teleta CapteG221467 N 0.000
PRDM8 Cavia porcellus ENSCPOG00000019738 N 0.000
ENSCSAG00000004478 Chlorocebus sabaeus ENSCSAG00000004478 N 0.000
CpipJ_CPIJ004963 Culex pipiens CpipJ_CPIJ004963 N 0.000
CPIJ004963 Culex quinquefasciatus CPIJ004963 N 0.000
KGM_11907 Danaus plexippus KGM_11907 N 0.000
prdm8b Danio rerio ENSDARG00000054683 N 0.000
PRDM8 Dasypus novemcinctus ENSDNOG00000011667 N 0.000
ENSECAG00000017767 Equus caballus ENSECAG00000017767 N 0.000
ENSFCAG00000026794 Felis catus ENSFCAG00000026794 N 0.000
ENSGMOG00000016370 Gadus morhua ENSGMOG00000016370 N 0.000
PRDM8 Gorilla gorilla ENSGGOG00000007501 N 0.000
HMEL017852 Heliconius melpomene HMEL017852 N 0.000
PRDM8 Homo sapiens ENSG00000152784 N 0.000
ENSSTOG00000015688 Ictidomys tridecemlineatus ENSSTOG00000015688 N 0.000
ISCW009928 Ixodes scapularis ISCW009928 N 0.000
ENSLACG00000001866 Latimeria chalumnae ENSLACG00000001866 N 0.000
ENSLOCG00000007226 Lepisosteus oculatus ENSLOCG00000007226 N 0.000
LDEC001191 Leptinotarsa decemlineata LDEC001191 N 0.000
LotgiG69958 Lottia gigantea LotgiG69958 N 0.000
LCUP008185 Lucilia cuprina LCUP008185 N 0.000
ENSP00000406998 Macaca fascicularis ENSP00000406998 N 0.000
PRDM8 Macaca mulatta ENSMMUG00000003338 N 0.000
ENSMEUG00000015872 Macropus eugenii ENSMEUG00000015872 N 0.000
MCINX010301 Melitaea cinxia MCINX010301 N 0.000
PRDM8 Monodelphis domestica ENSMODG00000020789 N 0.000
MDOA007546 Musca domestica MDOA007546 N 0.000
ENSMPUG00000006558 Mustela putorius furo ENSMPUG00000006558 N 0.000
Prdm8 Mus musculus ENSMUSG00000035456 N 0.000
PRDM8 Myotis lucifugus ENSMLUG00000030190 N 0.000
ENSNLEG00000008504 Nomascus leucogenys ENSNLEG00000008504 N 0.000
Ocbimv22006527m.g Octopus bimaculoides Ocbimv22006527m.g N 0.000
Ogr08710 Ophisaurus gracilis Ogr08710 N 0.000
ENSONIG00000014038 Oreochromis niloticus ENSONIG00000014038 N 0.000
prdm8b Oryzias latipes ENSORLG00000017786 N 0.000
ENSOGAG00000026262 Otolemur garnettii ENSOGAG00000026262 N 0.000
ENSOARG00000018972 Ovis aries ENSOARG00000018972 N 0.000
ENSPANG00000024349 Papio anubis ENSPANG00000024349 N 0.000
PHUM271650 Pediculus humanus PHUM271650 N 0.000
ENSPMAG00000005756 Petromyzon marinus ENSPMAG00000005756 N 0.000
PPAI006396 Phlebotomus papatasi PPAI006396 N 0.000
ENSPFOG00000011716 Poecilia formosa ENSPFOG00000011716 N 0.000
Pvit_15291 Pogona vitticeps Pvit_15291 N 0.000
ENSPPYG00000014879 Pongo abelii ENSPPYG00000014879 N 0.000
PRDM8 Procavia capensis ENSPCAG00000001081 N 0.000
Prdm8 Rattus norvegicus ENSRNOG00000002004 N 0.000
Sakowv30017448m.g Saccoglossus kowalevskii Sakowv30017448m.g N 0.000
ENSSHAG00000018147 Sarcophilus harrisii ENSSHAG00000018147 N 0.000
SMU15028407 Schmidtea mediterranea SMU15028407 N 0.000
PRDM8 Sorex araneus ENSSARG00000009823 N 0.000
SMAR006435 Strigamia maritima SMAR006435 N 0.000
prdm8b Takifugu rubripes ENSTRUG00000001003 N 0.000
tetur11g03890 Tetranychus urticae tetur11g03890 N 0.000
prdm8b Tetraodon nigroviridis ENSTNIG00000016712 N 0.000
TC013073 Tribolium castaneum TC013073 N 0.000
PRDM8 Tupaia belangeri ENSTBEG00000006138 N 0.000
prdm8 Xenopus tropicalis XB-GENE-984391 N 0.000
ENSXMAG00000009993 Xiphophorus maculatus ENSXMAG00000009993 N 0.000
L798_05037 Zootermopsis nevadensis L798_05037 N 0.000