CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Aa01543
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Aa01543
T288974_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Aa01543.1.p
Myb
15
62
KGPWTPEEDQKLLVFIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL
Pavir.Aa01543.1.p
Myb
68
93
RGKFTLQEEQTIIQLHALLGNSPLAS
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_2BL_216652F6B
Triticum aestivum
Traes_2BL_216652F6B
N
0.810
OS08G0433400
Oryza sativa
OS08G0433400
N
0.745
Lus10030442.g
Linum usitatissimum
Lus10030442.g
N
0.743
evm.TU.supercontig_1993.2
Carica papaya
evm.TU.supercontig_1993.2
N
0.722
Traes_2AL_839C94CA3
Triticum aestivum
Traes_2AL_839C94CA3
N
0.719
PRUPE_ppa018086mg
Prunus persica
PRUPE_ppa018086mg
N
0.713
e_gw1.389.24.1
Physcomitrella patens
e_gw1.389.24.1
N
0.695
Ca_16645
Cicer arietinum
Ca_16645
N
0.682
GLYMA05G17994
Glycine max
GLYMA05G17994
N
0.682
evm.TU.supercontig_29.114
Carica papaya
evm.TU.supercontig_29.114
N
0.680
ORGLA02G0218900
Oryza glaberrima
ORGLA02G0218900
N
0.670
evm.TU.supercontig_43.122
Carica papaya
evm.TU.supercontig_43.122
N
0.667
mgf004018m
Mimulus guttatus
mgf004018m
N
0.667
SELMODRAFT_39499
Selaginella moellendorffii
SELMODRAFT_39499
N
0.667
SELMODRAFT_39496
Selaginella moellendorffii
SELMODRAFT_39496
N
0.667
Traes_6DL_D1B5EA05F
Triticum aestivum
Traes_6DL_D1B5EA05F
N
0.666