CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Cb00156
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Cb00156
T289071_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.671
0.785
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.671
0.785
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.666
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Cb00156.1.p
Myb
4
50
KGSWSPEEDSLLTSLVEQHGPHRWSLISAAIPGRSGKSCRLRWCNQL
Pavir.Cb00156.1.p
Myb
56
101
HRPFTPREDALILAAHARYGNKWATIARLLPGRTDNSIKNHWNSNL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy