Pavir.Da00404 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Da00404 T289081_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN

NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.851 0.945
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH

DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.710 0.725
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.686 0.769
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00404.1.p Myb 11 57
Pavir.Da00404.1.p Myb 63 106

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si006938m.g Setaria italica Si006938m.g I 0.909
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.909
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.909
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.892
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.883
MLOC_63964 Hordeum vulgare MLOC_63964 I 0.863
TRIUR3_25447 Triticum urartu TRIUR3_25447 I 0.863
ONIVA06G26080 Oryza nivara ONIVA06G26080 I 0.853
OMERI06G22090 Oryza meridionalis OMERI06G22090 I 0.853
ORUFI06G23790 Oryza rufipogon ORUFI06G23790 I 0.853
OGLUM06G23260 Oryza glumaepatula OGLUM06G23260 I 0.853
ORGLA06G0184100 Oryza glaberrima ORGLA06G0184100 I 0.853
BGIOSGA020819 Oryza indica BGIOSGA020819 I 0.853
OS06G0637500 Oryza sativa OS06G0637500 I 0.853
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.851
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.851
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.851
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.851
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.851
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.851
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.851
OS02G0187700 Oryza sativa OS02G0187700 D 0.851
Traes_7DL_1FA87027B Triticum aestivum Traes_7DL_1FA87027B I 0.839
LPERR06G18380 Leersia perrieri LPERR06G18380 I 0.836
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.833
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.833
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.833
Si017917m.g Setaria italica Si017917m.g I 0.833
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.833
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.826
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.824
OPUNC06G19910 Oryza punctata OPUNC06G19910 I 0.823
MLOC_64963 Hordeum vulgare MLOC_64963 I 0.809
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.774
BRADI1G30252 Brachypodium distachyon BRADI1G30252 I 0.766
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.757
Pavir.J29846 Panicum virgatum Pavir.J29846 I 0.755
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.754
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.742
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.742
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.742
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.738
Si032789m.g Setaria italica Si032789m.g I 0.737
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.737
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.737
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.733
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.733
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.733
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.733
OS09G0106700 Oryza sativa OS09G0106700 I 0.733
OB09G10200 Oryza brachyantha OB09G10200 I 0.733
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.733
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.733
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.733
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.733
OBART09G00310 Oryza barthii OBART09G00310 I 0.733
mgf006151m Mimulus guttatus mgf006151m I 0.730
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.727
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.722
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.719
29801.m003096 Ricinus communis 29801.m003096 I 0.718
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.715
mgf003084m Mimulus guttatus mgf003084m I 0.714
Cucsa.232630 Cucumis sativus Cucsa.232630 I 0.713
Cla022889 Citrullus lanatus Cla022889 I 0.713
MYB1 Arabidopsis thaliana AT3G09230 D 0.710
TCM_033907 Theobroma cacao TCM_033907 I 0.709
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.709
mgf023922m Mimulus guttatus mgf023922m I 0.708
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.708
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.708
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.705
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.705
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.704
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.704
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.703
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.701
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.701
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.701
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.701
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.700
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.700
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.700
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.699
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.699
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.699
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.699
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.699
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.698
Pm018862 Prunus mume Pm018862 I 0.697
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.696
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.696
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.696
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.694
MDP0000284922 Malus domestica MDP0000284922 I 0.693
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.693
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.693
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.693
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.693
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.691
Cucsa.123440 Cucumis sativus Cucsa.123440 I 0.691
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.690
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.689
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.688
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.688
Cla021015 Citrullus lanatus Cla021015 I 0.688
PK07741.1 Cannabis sativa PK07741.1 D 0.686
mgf018580m Mimulus guttatus mgf018580m I 0.686
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I 0.686
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.686
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.685
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.683
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.683
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.683
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.683
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.683
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.683
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.683
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.683
PK29071.1 Cannabis sativa PK29071.1 I 0.683
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.681
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.680
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.679
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.679
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.679
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.679
TCM_042629 Theobroma cacao TCM_042629 I 0.679
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.678
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.678
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.678
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.677
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.677
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.677
Si001686m.g Setaria italica Si001686m.g I 0.677
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.677
mgf025567m Mimulus guttatus mgf025567m I 0.677
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.677
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.676
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.676
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.675
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.675
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.675
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.675
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.673
MDP0000807341 Malus domestica MDP0000807341 I 0.673
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.673
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.672
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.672
LPERR05G10150 Leersia perrieri LPERR05G10150 I 0.671
MDP0000894463 Malus domestica MDP0000894463 I 0.669
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.669
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.669
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.669
30170.m013927 Ricinus communis 30170.m013927 I 0.669
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.669
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.669
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I 0.669
Pm005220 Prunus mume Pm005220 I 0.669
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.669
mgf020432m Mimulus guttatus mgf020432m I 0.666
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.666
PK16550.1 Cannabis sativa PK16550.1 I 0.666
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.666
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.666
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.666
MDP0000319124 Malus domestica MDP0000319124 I 0.666
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.666
MDP0000203733 Malus domestica MDP0000203733 I 0.666
MDP0000478512 Malus domestica MDP0000478512 I 0.666
Cla018417 Citrullus lanatus Cla018417 I 0.666
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.666
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.666
TCM_007138 Theobroma cacao TCM_007138 I 0.665
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.665
PK17282.1 Cannabis sativa PK17282.1 I 0.664
TCM_021796 Theobroma cacao TCM_021796 I 0.663
Pm002576 Prunus mume Pm002576 I 0.663
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.663
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.663
27798.m000612 Ricinus communis 27798.m000612 I 0.663
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.663
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.663
mgf015566m Mimulus guttatus mgf015566m I 0.663
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.663
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.662
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.661