CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Da02398
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Da02398
T289093_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.701
0.753
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.684
0.742
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.684
0.742
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.671
0.774
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.671
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Da02398.1.p
Myb
15
63
KGPWTPEEDKLLVDYIKDSKGHGSWRRLPKLAGLNRCGKSCRLRWTNYL
Pavir.Da02398.1.p
Myb
69
114
RGRFTDEEEKLIIHLHSILGNKWSSIATKLPGRTDNEIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
329 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy