Pavir.Db00644 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Db00644 T289101_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR14
M00873_2.00 		Arabidopsis thaliana
NNAGATHCKS
SMGDATCTNN		 PBM
Franco-Zorrilla et al.(2014)
ARR14 		0.730 0.745
ARR14
M02293_2.00 		Arabidopsis thaliana
NAGATHYBNN
NNVRDATCTN		 PBM
Weirauch et al.(2014)
pTH7531 		0.730 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Db00644.1.p Myb 152 202

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene15029-v1.0-hybrid Fragaria vesca gene15029-v1.0-hybrid I 0.757
Sb05g004150 Sorghum bicolor Sb05g004150 I 0.750
GRMZM2G401835 Zea mays GRMZM2G401835 I 0.733
ARR14 Arabidopsis thaliana AT2G01760 D 0.730
ARR14 Arabidopsis lyrata scaffold_500093.1 I 0.730
GRMZM2G360523 Zea mays GRMZM2G360523 I 0.719
Si006013m.g Setaria italica Si006013m.g I 0.713
TCM_036926 Theobroma cacao TCM_036926 I 0.713
OB02G42700 Oryza brachyantha OB02G42700 I 0.713
OB06G14930 Oryza brachyantha OB06G14930 I 0.713
Si016546m.g Setaria italica Si016546m.g I 0.713
Traes_6BL_790C095EE Triticum aestivum Traes_6BL_790C095EE I 0.713
Sb04g035980 Sorghum bicolor Sb04g035980 I 0.713
LPERR06G04900 Leersia perrieri LPERR06G04900 I 0.713
TRIUR3_26858 Triticum urartu TRIUR3_26858 I 0.713
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.713
MLOC_76165 Hordeum vulgare MLOC_76165 I 0.713
OBART06G05360 Oryza barthii OBART06G05360 I 0.713
ORGLA06G0048800 Oryza glaberrima ORGLA06G0048800 I 0.713
ORGLA02G0311700 Oryza glaberrima ORGLA02G0311700 I 0.713
Traes_7DS_22DE624A5 Triticum aestivum Traes_7DS_22DE624A5 I 0.713
ORUFI06G05490 Oryza rufipogon ORUFI06G05490 I 0.713
RR23 Oryza sativa OS02G0796500 I 0.713
Traes_7DS_327FBC2CA Triticum aestivum Traes_7DS_327FBC2CA I 0.713
OPUNC06G05150 Oryza punctata OPUNC06G05150 I 0.713
ONIVA06G06160 Oryza nivara ONIVA06G06160 I 0.713
OGLUM06G05540 Oryza glumaepatula OGLUM06G05540 I 0.713
RR22 Oryza sativa OS06G0183100 I 0.713
Traes_6AL_9C9D677D4 Triticum aestivum Traes_6AL_9C9D677D4 I 0.713
OMERI06G06380 Oryza meridionalis OMERI06G06380 I 0.713
Traes_7AS_DECB8080D Triticum aestivum Traes_7AS_DECB8080D I 0.713
Traes_6DL_D1C9CE275 Triticum aestivum Traes_6DL_D1C9CE275 I 0.713
MLOC_11341 Hordeum vulgare MLOC_11341 I 0.713
BRADI1G47400 Brachypodium distachyon BRADI1G47400 I 0.713
Pavir.J08270 Panicum virgatum Pavir.J08270 I 0.713
F775_14758 Aegilops tauschii F775_14758 I 0.713
Pavir.J35630 Panicum virgatum Pavir.J35630 I 0.713
F775_19079 Aegilops tauschii F775_19079 I 0.713
RR23 Oryza indica BGIOSGA005436 I 0.713
RR22 Oryza indica BGIOSGA022430 I 0.713
BRADI3G54120 Brachypodium distachyon BRADI3G54120 I 0.713
GRMZM2G409974 Zea mays GRMZM2G409974 I 0.713
GRMZM2G479110 Zea mays GRMZM2G479110 I 0.713
Pavir.Da02067 Panicum virgatum Pavir.Da02067 I 0.713
TRIUR3_28229 Triticum urartu TRIUR3_28229 I 0.713
Sb10g005580 Sorghum bicolor Sb10g005580 I 0.713
Gorai.010G243900 Gossypium raimondii Gorai.010G243900 I 0.705
PDK_20s1782651g001 Phoenix dactylifera PDK_20s1782651g001 I 0.704
PDK_20s1362511g001 Phoenix dactylifera PDK_20s1362511g001 I 0.704
cassava8114.valid.m1 Manihot esculenta cassava8114.valid.m1 I 0.704
Cucsa.271670 Cucumis sativus Cucsa.271670 I 0.704
PDK_20s1342911g003 Phoenix dactylifera PDK_20s1342911g003 I 0.704
PK02601.1 Cannabis sativa PK02601.1 I 0.704
Cla021325 Citrullus lanatus Cla021325 I 0.704
Aquca_016_00168 Aquilegia coerulea Aquca_016_00168 I 0.704
SapurV1A.0730s0060 Salix purpurea SapurV1A.0730s0060 I 0.704
VIT_04s0008g05900 Vitis vinifera VIT_04s0008g05900 I 0.704
GLYMA17G33230 Glycine max GLYMA17G33230 I 0.704
PRUPE_ppa024819mg Prunus persica PRUPE_ppa024819mg I 0.704
orange1.1g005465m.g Citrus sinensis orange1.1g005465m.g I 0.704
GLYMA14G13320 Glycine max GLYMA14G13320 I 0.704
GLYMA06G06730 Glycine max GLYMA06G06730 I 0.704
Pm005710 Prunus mume Pm005710 I 0.704
Ciclev10007639m.g Citrus clementina Ciclev10007639m.g I 0.704
GLYMA04G06650 Glycine max GLYMA04G06650 I 0.704
SapurV1A.0705s0030 Salix purpurea SapurV1A.0705s0030 I 0.704
PGSC0003DMG400003196 Solanum tuberosum PGSC0003DMG400003196 I 0.701
Solyc07g005140.2 Solanum lycopersicum Solyc07g005140.2 I 0.701
mgf014863m Mimulus guttatus mgf014863m I 0.701
Si008512m.g Setaria italica Si008512m.g N 0.701
mgf001591m Mimulus guttatus mgf001591m I 0.701
VIT_11s0206g00060 Vitis vinifera VIT_11s0206g00060 I 0.701
SELMODRAFT_115021 Selaginella moellendorffii SELMODRAFT_115021 I 0.699
SELMODRAFT_440049 Selaginella moellendorffii SELMODRAFT_440049 I 0.699
SELMODRAFT_150746 Selaginella moellendorffii SELMODRAFT_150746 I 0.696
SELMODRAFT_442188 Selaginella moellendorffii SELMODRAFT_442188 I 0.696
CM1729.100.nc Lotus japonicus CM1729.100.nc I 0.693
Gorai.009G061000 Gossypium raimondii Gorai.009G061000 I 0.690
Si007844m.g Setaria italica Si007844m.g I 0.687
Traes_7AS_503B57D77 Triticum aestivum Traes_7AS_503B57D77 I 0.685
AMTR_s00019p00208460 Amborella trichopoda AMTR_s00019p00208460 I 0.683
GRMZM2G060485 Zea mays GRMZM2G060485 I 0.680
Pavir.Ab00568 Panicum virgatum Pavir.Ab00568 I 0.680
F775_13501 Aegilops tauschii F775_13501 I 0.680
BRADI3G06120 Brachypodium distachyon BRADI3G06120 I 0.680
Si016630m.g Setaria italica Si016630m.g I 0.680
Traes_6AS_A42E71A00 Triticum aestivum Traes_6AS_A42E71A00 I 0.680
Pavir.Aa03151 Panicum virgatum Pavir.Aa03151 I 0.680
MTR_3g106220 Medicago truncatula MTR_3g106220 I 0.680
Traes_6BS_B50BEBC7E Triticum aestivum Traes_6BS_B50BEBC7E I 0.680
Traes_6DS_EF4A57213 Triticum aestivum Traes_6DS_EF4A57213 I 0.680
Sb04g005580 Sorghum bicolor Sb04g005580 I 0.680
MLOC_3955 Hordeum vulgare MLOC_3955 I 0.680
TRIUR3_31924 Triticum urartu TRIUR3_31924 I 0.680
Bo1g010830 Brassica oleracea Bo1g010830 I 0.676
Pavir.Db00757 Panicum virgatum Pavir.Db00757 N 0.676
Pavir.J10177 Panicum virgatum Pavir.J10177 N 0.676
Ciclev10004989m.g Citrus clementina Ciclev10004989m.g I 0.675
Gorai.002G029200 Gossypium raimondii Gorai.002G029200 I 0.675
evm.TU.supercontig_9.105 Carica papaya evm.TU.supercontig_9.105 I 0.675
Eucgr.A00189 Eucalyptus grandis Eucgr.A00189 I 0.675
Gorai.011G196400 Gossypium raimondii Gorai.011G196400 I 0.675
MDP0000224740 Malus domestica MDP0000224740 I 0.675
PK26059.1 Cannabis sativa PK26059.1 I 0.675
MDP0000290818 Malus domestica MDP0000290818 I 0.675
Ciclev10004470m.g Citrus clementina Ciclev10004470m.g I 0.675
Aquca_003_00615 Aquilegia coerulea Aquca_003_00615 I 0.675
Cla009424 Citrullus lanatus Cla009424 I 0.675
Ca_02989 Cicer arietinum Ca_02989 I 0.675
Cla022101 Citrullus lanatus Cla022101 I 0.675
29889.m003245 Ricinus communis 29889.m003245 I 0.675
Cucsa.252760 Cucumis sativus Cucsa.252760 I 0.675
cassava43032.valid.m1 Manihot esculenta cassava43032.valid.m1 I 0.675
VIT_05s0077g01480 Vitis vinifera VIT_05s0077g01480 I 0.675
SELMODRAFT_173793 Selaginella moellendorffii SELMODRAFT_173793 I 0.675
POPTR_0010s00320 Populus trichocarpa POPTR_0010s00320 I 0.675
GLYMA07G37220 Glycine max GLYMA07G37220 I 0.675
PRUPE_ppa002408mg Prunus persica PRUPE_ppa002408mg I 0.675
POPTR_0008s22990 Populus trichocarpa POPTR_0008s22990 I 0.675
PGSC0003DMG401025624 Solanum tuberosum PGSC0003DMG401025624 I 0.675
MTR_4g121020 Medicago truncatula MTR_4g121020 I 0.675
PGSC0003DMG400023534 Solanum tuberosum PGSC0003DMG400023534 I 0.675
SELMODRAFT_450181 Selaginella moellendorffii SELMODRAFT_450181 I 0.675
GLYMA17G03380 Glycine max GLYMA17G03380 I 0.675
Solyc05g054390.2 Solanum lycopersicum Solyc05g054390.2 I 0.675
Solyc01g065540.2 Solanum lycopersicum Solyc01g065540.2 I 0.675
TCM_021300 Theobroma cacao TCM_021300 I 0.675
Bo2g134560 Brassica oleracea Bo2g134560 I 0.672
Carubv10018465m.g Capsella rubella Carubv10018465m.g I 0.670
CHLREDRAFT_130971 Chlamydomonas reinhardtii CHLREDRAFT_130971 I 0.670
mgf012203m Mimulus guttatus mgf012203m I 0.670
Cagra.2235s0034 Capsella grandiflora Cagra.2235s0034 I 0.670
mgf010113m Mimulus guttatus mgf010113m I 0.670
GLYMA15G15520 Glycine max GLYMA15G15520 I 0.669
GLYMA05G34516 Glycine max GLYMA05G34516 I 0.669
AMTR_s00176p00045260 Amborella trichopoda AMTR_s00176p00045260 I 0.668
LPERR03G08040 Leersia perrieri LPERR03G08040 I 0.668
OB03G19140 Oryza brachyantha OB03G19140 I 0.668
Gorai.005G156900 Gossypium raimondii Gorai.005G156900 I 0.668
OBART03G08950 Oryza barthii OBART03G08950 I 0.668
evm.TU.supercontig_2.186 Carica papaya evm.TU.supercontig_2.186 I 0.668
Eucgr.G02094 Eucalyptus grandis Eucgr.G02094 I 0.668
OGLUM03G09080 Oryza glumaepatula OGLUM03G09080 I 0.668
GRMZM2G099797 Zea mays GRMZM2G099797 I 0.668
OLONG_002370 Oryza longistaminata OLONG_002370 I 0.668
RR21 Oryza indica BGIOSGA012149 I 0.668
BRADI1G69480 Brachypodium distachyon BRADI1G69480 I 0.668
SapurV1A.0015s0530 Salix purpurea SapurV1A.0015s0530 I 0.668
SapurV1A.0055s0320 Salix purpurea SapurV1A.0055s0320 I 0.668
Pavir.Ib00921 Panicum virgatum Pavir.Ib00921 I 0.668
Pavir.Ia04946 Panicum virgatum Pavir.Ia04946 I 0.668
GSMUA_Achr8G30850_001 Musa acuminata GSMUA_Achr8G30850_001 I 0.668
GSMUA_Achr1G22230_001 Musa acuminata GSMUA_Achr1G22230_001 I 0.668
GRMZM2G126834 Zea mays GRMZM2G126834 I 0.668
F775_32153 Aegilops tauschii F775_32153 I 0.668
orange1.1g005938m.g Citrus sinensis orange1.1g005938m.g I 0.668
OMERI03G08390 Oryza meridionalis OMERI03G08390 I 0.668
ORUFI03G09090 Oryza rufipogon ORUFI03G09090 I 0.668
Sb01g042400 Sorghum bicolor Sb01g042400 I 0.668
ORGLA03G0086800 Oryza glaberrima ORGLA03G0086800 I 0.668
TRIUR3_25342 Triticum urartu TRIUR3_25342 I 0.668
Ciclev10014527m.g Citrus clementina Ciclev10014527m.g I 0.668
RR21 Oryza sativa OS03G0224200 I 0.668
POPTR_0010s11600 Populus trichocarpa POPTR_0010s11600 I 0.668
POPTR_0008s13490 Populus trichocarpa POPTR_0008s13490 I 0.668
PGSC0003DMG400029514 Solanum tuberosum PGSC0003DMG400029514 I 0.668
27647.m000179 Ricinus communis 27647.m000179 I 0.668
Si034517m.g Setaria italica Si034517m.g I 0.668
OPUNC03G08640 Oryza punctata OPUNC03G08640 I 0.668
Traes_4DL_2527CA8BF Triticum aestivum Traes_4DL_2527CA8BF I 0.668
Traes_4AS_6486B493A Triticum aestivum Traes_4AS_6486B493A I 0.668
Traes_4BL_941E7DE4D Triticum aestivum Traes_4BL_941E7DE4D I 0.668
Aquca_091_00086 Aquilegia coerulea Aquca_091_00086 I 0.668
TCM_011067 Theobroma cacao TCM_011067 I 0.668
ARR14 Vitis vinifera VIT_01s0011g05830 I 0.668
Solyc04g008050.2 Solanum lycopersicum Solyc04g008050.2 I 0.668
ONIVA06G01160 Oryza nivara ONIVA06G01160 I 0.668
PK09202.1 Cannabis sativa PK09202.1 I 0.665
RR24 Oryza indica BGIOSGA007015 I 0.665
RR24 Oryza sativa OS02G0182100 I 0.665
OBART02G06200 Oryza barthii OBART02G06200 I 0.665
OGLUM02G06200 Oryza glumaepatula OGLUM02G06200 I 0.665
OMERI02G07120 Oryza meridionalis OMERI02G07120 I 0.665
OLONG_007266 Oryza longistaminata OLONG_007266 I 0.665
ONIVA02G07230 Oryza nivara ONIVA02G07230 I 0.665
OB02G15530 Oryza brachyantha OB02G15530 I 0.665
ORGLA02G0057500 Oryza glaberrima ORGLA02G0057500 I 0.665
LPERR02G05460 Leersia perrieri LPERR02G05460 I 0.665
ORUFI02G06340 Oryza rufipogon ORUFI02G06340 I 0.665
Sb10g024180 Sorghum bicolor Sb10g024180 N 0.662