CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ea00256
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ea00256
T289118_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ea00256.1.p
Myb
77
125
RGPWSPEEDEALRSYVQRHGSGGNWISMPKKAGLKRCGKSCRLRWLNYL
Pavir.Ea00256.1.p
Myb
131
176
HGGFTDEEDAVILSLYTQLGSKWSLIASQLEGRTDNDVKNYWNTKL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Eb00254
Panicum virgatum
Pavir.Eb00254
N
0.906
Si002629m.g
Setaria italica
Si002629m.g
N
0.906
Sb03g003120
Sorghum bicolor
Sb03g003120
N
0.885
GRMZM2G001875
Zea mays
GRMZM2G001875
N
0.882
MLOC_67874
Hordeum vulgare
MLOC_67874
N
0.750
ORGLA01G0055500
Oryza glaberrima
ORGLA01G0055500
I
0.743
OS01G0191900
Oryza sativa
OS01G0191900
I
0.743
BGIOSGA002218
Oryza indica
BGIOSGA002218
I
0.743
AMTR_s00056p00204920
Amborella trichopoda
AMTR_s00056p00204920
I
0.740
Pavir.J11789
Panicum virgatum
Pavir.J11789
I
0.738
TRAES3BF100100070CFD_g
Triticum aestivum
TRAES3BF100100070CFD_g
N
0.724
gene02652-v1.0-hybrid
Fragaria vesca
gene02652-v1.0-hybrid
I
0.724
PK14382.1
Cannabis sativa
PK14382.1
I
0.715
Aquca_001_00195
Aquilegia coerulea
Aquca_001_00195
I
0.713
VIT_04s0008g00620
Vitis vinifera
VIT_04s0008g00620
I
0.713
Ciclev10010621m.g
Citrus clementina
Ciclev10010621m.g
I
0.713
orange1.1g045583m.g
Citrus sinensis
orange1.1g045583m.g
I
0.713
Gorai.001G024300
Gossypium raimondii
Gorai.001G024300
I
0.713
Pavir.J15551
Panicum virgatum
Pavir.J15551
I
0.713
Sb09g027800
Sorghum bicolor
Sb09g027800
I
0.710
BRADI2G17280
Brachypodium distachyon
BRADI2G17280
N
0.710
Si022874m.g
Setaria italica
Si022874m.g
I
0.710
Traes_1AL_F0688BFDE
Triticum aestivum
Traes_1AL_F0688BFDE
I
0.705
TCM_037245
Theobroma cacao
TCM_037245
I
0.702
GLYMA17G35020
Glycine max
GLYMA17G35020
I
0.702
BRADI2G05740
Brachypodium distachyon
BRADI2G05740
N
0.701
MDP0000266156
Malus domestica
MDP0000266156
N
0.700
SapurV1A.3377s0010
Salix purpurea
SapurV1A.3377s0010
I
0.698
SapurV1A.0890s0050
Salix purpurea
SapurV1A.0890s0050
I
0.698
POPTR_0006s25060
Populus trichocarpa
POPTR_0006s25060
I
0.698
MTR_1g017000
Medicago truncatula
MTR_1g017000
I
0.698
LPERR05G20870
Leersia perrieri
LPERR05G20870
I
0.697
MLOC_71129
Hordeum vulgare
MLOC_71129
I
0.697
OBART01G26850
Oryza barthii
OBART01G26850
I
0.697
GRMZM2G069325
Zea mays
GRMZM2G069325
I
0.697
BGIOSGA004221
Oryza indica
BGIOSGA004221
I
0.697
BRADI2G46770
Brachypodium distachyon
BRADI2G46770
I
0.697
ORUFI01G29860
Oryza rufipogon
ORUFI01G29860
I
0.697
TRAES3BF058700130CFD_g
Triticum aestivum
TRAES3BF058700130CFD_g
I
0.697
ORGLA01G0219900
Oryza glaberrima
ORGLA01G0219900
I
0.697
OGLUM01G30780
Oryza glumaepatula
OGLUM01G30780
I
0.697
GSMUA_Achr4G01050_001
Musa acuminata
GSMUA_Achr4G01050_001
I
0.696
cassava16944.m1
Manihot esculenta
cassava16944.m1
I
0.693
OGLUM01G33320
Oryza glumaepatula
OGLUM01G33320
N
0.689
Sb03g033160
Sorghum bicolor
Sb03g033160
N
0.689
ORUFI01G32340
Oryza rufipogon
ORUFI01G32340
N
0.689
OB01G38240
Oryza brachyantha
OB01G38240
N
0.689
Si004558m.g
Setaria italica
Si004558m.g
N
0.689
OS01G0722300
Oryza sativa
OS01G0722300
N
0.689
Pavir.Ea02676
Panicum virgatum
Pavir.Ea02676
N
0.689
OBART01G29250
Oryza barthii
OBART01G29250
N
0.689
BGIOSGA004364
Oryza indica
BGIOSGA004364
N
0.689
Pavir.Eb02926
Panicum virgatum
Pavir.Eb02926
N
0.689
BRADI4G38965
Brachypodium distachyon
BRADI4G38965
I
0.689
GRMZM2G167829
Zea mays
GRMZM2G167829
N
0.689
mgf002711m
Mimulus guttatus
mgf002711m
I
0.686
PGSC0003DMG400000349
Solanum tuberosum
PGSC0003DMG400000349
I
0.684
TCM_037728
Theobroma cacao
TCM_037728
I
0.682
Si002350m.g
Setaria italica
Si002350m.g
I
0.680
ORUFI05G26880
Oryza rufipogon
ORUFI05G26880
I
0.680
OS05G0553400
Oryza sativa
OS05G0553400
I
0.680
GRMZM2G151205
Zea mays
GRMZM2G151205
N
0.680
Pavir.J34453
Panicum virgatum
Pavir.J34453
I
0.680
LPERR01G22970
Leersia perrieri
LPERR01G22970
I
0.680
OB01G36020
Oryza brachyantha
OB01G36020
I
0.680
GSMUA_Achr1G04910_001
Musa acuminata
GSMUA_Achr1G04910_001
I
0.680
PRUPE_ppa019554mg
Prunus persica
PRUPE_ppa019554mg
I
0.680
BGIOSGA017601
Oryza indica
BGIOSGA017601
I
0.680
ORGLA05G0216200
Oryza glaberrima
ORGLA05G0216200
I
0.680
Lus10001394.g
Linum usitatissimum
Lus10001394.g
I
0.679
ONIVA01G33470
Oryza nivara
ONIVA01G33470
N
0.678
Eucgr.C03699
Eucalyptus grandis
Eucgr.C03699
I
0.677
Solyc12g008670.1
Solanum lycopersicum
Solyc12g008670.1
I
0.677
Gorai.010G079900
Gossypium raimondii
Gorai.010G079900
I
0.676
GLYMA14G10483
Glycine max
GLYMA14G10483
I
0.672
Traes_7DL_20EC9096A
Triticum aestivum
Traes_7DL_20EC9096A
I
0.672
MLOC_44167
Hordeum vulgare
MLOC_44167
I
0.672
GRMZM2G006352
Zea mays
GRMZM2G006352
I
0.671
Eucgr.C00624
Eucalyptus grandis
Eucgr.C00624
I
0.670
Eucgr.C00947
Eucalyptus grandis
Eucgr.C00947
I
0.669
F775_22853
Aegilops tauschii
F775_22853
N
0.669
SapurV1A.1188s0040
Salix purpurea
SapurV1A.1188s0040
I
0.665
LjSGA_033877.1
Lotus japonicus
LjSGA_033877.1
I
0.663
GLYMA13G01200
Glycine max
GLYMA13G01200
I
0.663
Bo8g078940
Brassica oleracea
Bo8g078940
I
0.663
MDP0000587648
Malus domestica
MDP0000587648
I
0.663
POPTR_0004s22490
Populus trichocarpa
POPTR_0004s22490
I
0.662
Solyc06g074910.2
Solanum lycopersicum
Solyc06g074910.2
I
0.662
Aquca_030_00066
Aquilegia coerulea
Aquca_030_00066
I
0.662
POPTR_0009s01270
Populus trichocarpa
POPTR_0009s01270
I
0.662
SapurV1A.0049s0100
Salix purpurea
SapurV1A.0049s0100
I
0.662
GRMZM2G011422
Zea mays
GRMZM2G011422
I
0.661
Cucsa.288590
Cucumis sativus
Cucsa.288590
I
0.661