Pavir.Eb00254 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Eb00254 T289151_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00254.1.p Myb 90 138
Pavir.Eb00254.1.p Myb 144 189
Pavir.Eb00254.2.p Myb 14 62
Pavir.Eb00254.2.p Myb 68 113

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si002629m.g Setaria italica Si002629m.g N 0.906
Pavir.Ea00256 Panicum virgatum Pavir.Ea00256 N 0.906
Sb03g003120 Sorghum bicolor Sb03g003120 N 0.882
GRMZM2G001875 Zea mays GRMZM2G001875 N 0.882
MLOC_67874 Hordeum vulgare MLOC_67874 N 0.750
BGIOSGA002218 Oryza indica BGIOSGA002218 I 0.746
ORGLA01G0055500 Oryza glaberrima ORGLA01G0055500 I 0.746
AMTR_s00056p00204920 Amborella trichopoda AMTR_s00056p00204920 I 0.743
OS01G0191900 Oryza sativa OS01G0191900 I 0.743
Pavir.J11789 Panicum virgatum Pavir.J11789 I 0.735
TRAES3BF100100070CFD_g Triticum aestivum TRAES3BF100100070CFD_g N 0.724
gene02652-v1.0-hybrid Fragaria vesca gene02652-v1.0-hybrid I 0.724
PK14382.1 Cannabis sativa PK14382.1 I 0.715
Aquca_001_00195 Aquilegia coerulea Aquca_001_00195 I 0.713
VIT_04s0008g00620 Vitis vinifera VIT_04s0008g00620 I 0.713
Ciclev10010621m.g Citrus clementina Ciclev10010621m.g I 0.713
orange1.1g045583m.g Citrus sinensis orange1.1g045583m.g I 0.713
Gorai.001G024300 Gossypium raimondii Gorai.001G024300 I 0.713
Sb09g027800 Sorghum bicolor Sb09g027800 I 0.710
BRADI2G17280 Brachypodium distachyon BRADI2G17280 N 0.710
Pavir.J15551 Panicum virgatum Pavir.J15551 I 0.710
Si022874m.g Setaria italica Si022874m.g I 0.710
Traes_1AL_F0688BFDE Triticum aestivum Traes_1AL_F0688BFDE I 0.705
GLYMA17G35020 Glycine max GLYMA17G35020 I 0.702
TCM_037245 Theobroma cacao TCM_037245 I 0.702
BRADI2G05740 Brachypodium distachyon BRADI2G05740 N 0.701
MDP0000266156 Malus domestica MDP0000266156 N 0.700
SapurV1A.3377s0010 Salix purpurea SapurV1A.3377s0010 I 0.698
SapurV1A.0890s0050 Salix purpurea SapurV1A.0890s0050 I 0.698
POPTR_0006s25060 Populus trichocarpa POPTR_0006s25060 I 0.698
MTR_1g017000 Medicago truncatula MTR_1g017000 I 0.698
TRAES3BF058700130CFD_g Triticum aestivum TRAES3BF058700130CFD_g I 0.697
MLOC_71129 Hordeum vulgare MLOC_71129 I 0.697
GRMZM2G069325 Zea mays GRMZM2G069325 I 0.697
LPERR05G20870 Leersia perrieri LPERR05G20870 I 0.697
ORUFI01G29860 Oryza rufipogon ORUFI01G29860 I 0.697
BRADI2G46770 Brachypodium distachyon BRADI2G46770 I 0.697
BGIOSGA004221 Oryza indica BGIOSGA004221 I 0.697
OGLUM01G30780 Oryza glumaepatula OGLUM01G30780 I 0.697
ORGLA01G0219900 Oryza glaberrima ORGLA01G0219900 I 0.697
OBART01G26850 Oryza barthii OBART01G26850 I 0.697
GSMUA_Achr4G01050_001 Musa acuminata GSMUA_Achr4G01050_001 I 0.696
cassava16944.m1 Manihot esculenta cassava16944.m1 I 0.693
BRADI4G38965 Brachypodium distachyon BRADI4G38965 I 0.689
Si004558m.g Setaria italica Si004558m.g N 0.686
OGLUM01G33320 Oryza glumaepatula OGLUM01G33320 N 0.686
ORUFI01G32340 Oryza rufipogon ORUFI01G32340 N 0.686
OBART01G29250 Oryza barthii OBART01G29250 N 0.686
OS01G0722300 Oryza sativa OS01G0722300 N 0.686
GRMZM2G167829 Zea mays GRMZM2G167829 N 0.686
Sb03g033160 Sorghum bicolor Sb03g033160 N 0.686
OB01G38240 Oryza brachyantha OB01G38240 N 0.686
Pavir.Eb02926 Panicum virgatum Pavir.Eb02926 N 0.686
Pavir.Ea02676 Panicum virgatum Pavir.Ea02676 N 0.686
BGIOSGA004364 Oryza indica BGIOSGA004364 N 0.686
mgf002711m Mimulus guttatus mgf002711m I 0.683
TCM_037728 Theobroma cacao TCM_037728 I 0.682
PGSC0003DMG400000349 Solanum tuberosum PGSC0003DMG400000349 I 0.681
BGIOSGA017601 Oryza indica BGIOSGA017601 I 0.680
Pavir.J34453 Panicum virgatum Pavir.J34453 I 0.680
GSMUA_Achr1G04910_001 Musa acuminata GSMUA_Achr1G04910_001 I 0.680
PRUPE_ppa019554mg Prunus persica PRUPE_ppa019554mg I 0.680
LPERR01G22970 Leersia perrieri LPERR01G22970 I 0.680
OB01G36020 Oryza brachyantha OB01G36020 I 0.680
OS05G0553400 Oryza sativa OS05G0553400 I 0.680
ORGLA05G0216200 Oryza glaberrima ORGLA05G0216200 I 0.680
ORUFI05G26880 Oryza rufipogon ORUFI05G26880 I 0.680
Si002350m.g Setaria italica Si002350m.g I 0.680
Lus10001394.g Linum usitatissimum Lus10001394.g I 0.679
Eucgr.C03699 Eucalyptus grandis Eucgr.C03699 I 0.677
GRMZM2G151205 Zea mays GRMZM2G151205 N 0.677
Gorai.010G079900 Gossypium raimondii Gorai.010G079900 I 0.676
ONIVA01G33470 Oryza nivara ONIVA01G33470 N 0.675
Solyc12g008670.1 Solanum lycopersicum Solyc12g008670.1 I 0.674
GLYMA14G10483 Glycine max GLYMA14G10483 I 0.672
Traes_7DL_20EC9096A Triticum aestivum Traes_7DL_20EC9096A I 0.672
MLOC_44167 Hordeum vulgare MLOC_44167 I 0.672
GRMZM2G006352 Zea mays GRMZM2G006352 I 0.671
Eucgr.C00624 Eucalyptus grandis Eucgr.C00624 I 0.670
F775_22853 Aegilops tauschii F775_22853 N 0.666
SapurV1A.1188s0040 Salix purpurea SapurV1A.1188s0040 I 0.665
Eucgr.C00947 Eucalyptus grandis Eucgr.C00947 I 0.665
MDP0000587648 Malus domestica MDP0000587648 I 0.663
Bo8g078940 Brassica oleracea Bo8g078940 I 0.663
GLYMA13G01200 Glycine max GLYMA13G01200 I 0.663
LjSGA_033877.1 Lotus japonicus LjSGA_033877.1 I 0.663
SapurV1A.0049s0100 Salix purpurea SapurV1A.0049s0100 I 0.662
Solyc06g074910.2 Solanum lycopersicum Solyc06g074910.2 I 0.662
Aquca_030_00066 Aquilegia coerulea Aquca_030_00066 I 0.662
POPTR_0004s22490 Populus trichocarpa POPTR_0004s22490 I 0.662
POPTR_0009s01270 Populus trichocarpa POPTR_0009s01270 I 0.662
GRMZM2G011422 Zea mays GRMZM2G011422 I 0.661
Cucsa.288590 Cucumis sativus Cucsa.288590 I 0.661