Pavir.Fa00850 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fa00850 T289179_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY

RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.813 0.903
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH

DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.735 0.839
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH

DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.698 0.763
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH

DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.698 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00850.1.p Myb 14 61
Pavir.Fa00850.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK21166.1 Cannabis sativa PK21166.1 D 0.813
MYB99 Arabidopsis thaliana AT5G62320 D 0.698
MYB43 Arabidopsis thaliana AT5G16600 D 0.735
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.667
Bostr.25463s0081 Boechera stricta Bostr.25463s0081 I 0.744
Bostr.26959s0295 Boechera stricta Bostr.26959s0295 I 0.822
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I 0.735
Bostr.7867s0052 Boechera stricta Bostr.7867s0052 I 0.724
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I 0.735
Cagra.1300s0004 Capsella grandiflora Cagra.1300s0004 I 0.822
Bostr.0568s0574 Boechera stricta Bostr.0568s0574 I 0.690
Aquca_013_00661 Aquilegia coerulea Aquca_013_00661 I 0.798
mgf018940m Mimulus guttatus mgf018940m I 0.664
mgf017719m Mimulus guttatus mgf017719m I 0.789
gw1.433.32.1 Physcomitrella patens gw1.433.32.1 I 0.682
fgenesh1_pg.scaffold_420000003 Physcomitrella patens fgenesh1_pg.scaffold_420000003 I 0.670
Cucsa.375180 Cucumis sativus Cucsa.375180 I 0.798
Cucsa.302180 Cucumis sativus Cucsa.302180 I 0.789
Cagra.14303s0002 Capsella grandiflora Cagra.14303s0002 I 0.744
Cagra.4003s0023 Capsella grandiflora Cagra.4003s0023 I 0.707
Eucgr.J01601 Eucalyptus grandis Eucgr.J01601 I 0.847
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.664
Eucgr.F02864 Eucalyptus grandis Eucgr.F02864 I 0.822
Eucgr.D02014 Eucalyptus grandis Eucgr.D02014 I 0.744
Ciclev10021695m.g Citrus clementina Ciclev10021695m.g I 0.789
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.663
Ciclev10012265m.g Citrus clementina Ciclev10012265m.g I 0.822
Ciclev10005666m.g Citrus clementina Ciclev10005666m.g I 0.747
Carubv10028436m.g Capsella rubella Carubv10028436m.g I 0.707
Carubv10020766m.g Capsella rubella Carubv10020766m.g I 0.822
Carubv10005483m.g Capsella rubella Carubv10005483m.g I 0.724
Carubv10003172m.g Capsella rubella Carubv10003172m.g I 0.744
Carubv10001378m.g Capsella rubella Carubv10001378m.g I 0.735
Cagra.6652s0005 Capsella grandiflora Cagra.6652s0005 I 0.724
Cucsa.115620 Cucumis sativus Cucsa.115620 I 0.747
Cucsa.006170 Cucumis sativus Cucsa.006170 I 0.822
cassava6251.valid.m1 Manihot esculenta cassava6251.valid.m1 I 0.822
VIT_16s0022g01210 Vitis vinifera VIT_16s0022g01210 I 0.747
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.664
MYB43 Vitis vinifera VIT_14s0006g00450 I 0.813
VIT_00s1241g00010 Vitis vinifera VIT_00s1241g00010 I 0.789
TRIUR3_16495 Triticum urartu TRIUR3_16495 I 0.790
Traes_7DS_5100A9609 Triticum aestivum Traes_7DS_5100A9609 I 0.774
Traes_5DL_46D39C394 Triticum aestivum Traes_5DL_46D39C394 I 0.824
Traes_5DL_0B2C5ADF6 Triticum aestivum Traes_5DL_0B2C5ADF6 I 0.765
Traes_5BL_D85C0EF26 Triticum aestivum Traes_5BL_D85C0EF26 I 0.824
Traes_5BL_30D8E6BE2 Triticum aestivum Traes_5BL_30D8E6BE2 I 0.765
TCM_019116 Theobroma cacao TCM_019116 I 0.813
TCM_017051 Theobroma cacao TCM_017051 I 0.664
TCM_016054 Theobroma cacao TCM_016054 I 0.789
TCM_014956 Theobroma cacao TCM_014956 I 0.792
Ca_08722 Cicer arietinum Ca_08722 I 0.793
Ca_13286 Cicer arietinum Ca_13286 I 0.822
cassava47045.m1 Manihot esculenta cassava47045.m1 I 0.792
cassava33331.m1 Manihot esculenta cassava33331.m1 I 0.789
cassava30009.valid.m1 Manihot esculenta cassava30009.valid.m1 I 0.825
cassava21367.m1 Manihot esculenta cassava21367.m1 I 0.781
cassava2058.valid.m1 Manihot esculenta cassava2058.valid.m1 I 0.798
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.664
30190.m011004 Ricinus communis 30190.m011004 I 0.789
Pm023573 Prunus mume Pm023573 I 0.789
Pm019472 Prunus mume Pm019472 I 0.781
Pm015564 Prunus mume Pm015564 I 0.664
Pm013020 Prunus mume Pm013020 I 0.822
Cla011736 Citrullus lanatus Cla011736 I 0.789
Cla009311 Citrullus lanatus Cla009311 I 0.813
Cla003626 Citrullus lanatus Cla003626 I 0.747
Solyc11g011050.1 Solanum lycopersicum Solyc11g011050.1 I 0.822
Eucgr.K00153 Eucalyptus grandis Eucgr.K00153 I 0.792
PDK_20s1306131g002 Phoenix dactylifera PDK_20s1306131g002 I 0.794
Pavir.J36915 Panicum virgatum Pavir.J36915 I 0.739
Pavir.J21364 Panicum virgatum Pavir.J21364 I 0.794
Pavir.Fb02321 Panicum virgatum Pavir.Fb02321 I 0.739
Pavir.Fb01563 Panicum virgatum Pavir.Fb01563 I 0.889
Pavir.Db01743 Panicum virgatum Pavir.Db01743 I 0.779
Pavir.Da01229 Panicum virgatum Pavir.Da01229 I 0.751
Pavir.Bb02654 Panicum virgatum Pavir.Bb02654 I 0.715
Pavir.Bb01873 Panicum virgatum Pavir.Bb01873 I 0.778
Pavir.Bb01872 Panicum virgatum Pavir.Bb01872 I 0.776
Pavir.Ba02150 Panicum virgatum Pavir.Ba02150 I 0.776
Pavir.Ba02149 Panicum virgatum Pavir.Ba02149 I 0.769
Pavir.Ba02148 Panicum virgatum Pavir.Ba02148 I 0.794
Pavir.Ba01239 Panicum virgatum Pavir.Ba01239 I 0.715
Pavir.Ab02913 Panicum virgatum Pavir.Ab02913 I 0.754
SapurV1A.0045s0090 Salix purpurea SapurV1A.0045s0090 I 0.789
SapurV1A.0102s0470 Salix purpurea SapurV1A.0102s0470 I 0.790
chr4.CM0126.370.nd Lotus japonicus chr4.CM0126.370.nd I 0.793
PK08857.1 Cannabis sativa PK08857.1 I 0.748
Thhalv10028864m.g Eutrema salsugineum Thhalv10028864m.g I 0.744
Thhalv10027281m.g Eutrema salsugineum Thhalv10027281m.g I 0.730
Thhalv10019852m.g Eutrema salsugineum Thhalv10019852m.g I 0.822
Thhalv10014086m.g Eutrema salsugineum Thhalv10014086m.g I 0.735
Thhalv10004868m.g Eutrema salsugineum Thhalv10004868m.g I 0.707
SapurV1A.1318s0060 Salix purpurea SapurV1A.1318s0060 I 0.790
SapurV1A.0634s0020 Salix purpurea SapurV1A.0634s0020 I 0.789
SapurV1A.0456s0310 Salix purpurea SapurV1A.0456s0310 I 0.797
SapurV1A.0390s0060 Salix purpurea SapurV1A.0390s0060 I 0.805
SapurV1A.0367s0020 Salix purpurea SapurV1A.0367s0020 I 0.797
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.664
SapurV1A.0129s0270 Salix purpurea SapurV1A.0129s0270 I 0.792
Pavir.Ab02021 Panicum virgatum Pavir.Ab02021 I 0.663
Pavir.Aa00435 Panicum virgatum Pavir.Aa00435 I 0.781
orange1.1g024849m.g Citrus sinensis orange1.1g024849m.g I 0.747
Gorai.008G060100 Gossypium raimondii Gorai.008G060100 I 0.806
Gorai.006G195700 Gossypium raimondii Gorai.006G195700 I 0.729
Gorai.006G064000 Gossypium raimondii Gorai.006G064000 I 0.787
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.664
Gorai.004G201900 Gossypium raimondii Gorai.004G201900 I 0.789
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I 0.822
Gorai.003G168100 Gossypium raimondii Gorai.003G168100 I 0.789
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.694
Gorai.001G205300 Gossypium raimondii Gorai.001G205300 I 0.822
gene32268-v1.0-hybrid Fragaria vesca gene32268-v1.0-hybrid I 0.789
gene30520-v1.0-hybrid Fragaria vesca gene30520-v1.0-hybrid I 0.822
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.664
gene21264-v1.0-hybrid Fragaria vesca gene21264-v1.0-hybrid I 0.792
evm.TU.supercontig_3.300 Carica papaya evm.TU.supercontig_3.300 I 0.747
Gorai.008G238800 Gossypium raimondii Gorai.008G238800 I 0.798
Lus10002296.g Linum usitatissimum Lus10002296.g I 0.828
orange1.1g024441m.g Citrus sinensis orange1.1g024441m.g I 0.789
orange1.1g021498m.g Citrus sinensis orange1.1g021498m.g I 0.822
MDP0000787808 Malus domestica MDP0000787808 I 0.770
MDP0000682032 Malus domestica MDP0000682032 I 0.789
MDP0000602739 Malus domestica MDP0000602739 I 0.781
MDP0000303239 Malus domestica MDP0000303239 I 0.664
MDP0000241111 Malus domestica MDP0000241111 I 0.664
Lus10038913.g Linum usitatissimum Lus10038913.g I 0.777
Lus10032226.g Linum usitatissimum Lus10032226.g I 0.789
Lus10027197.g Linum usitatissimum Lus10027197.g I 0.752
Lus10024589.g Linum usitatissimum Lus10024589.g I 0.789
Lus10010974.g Linum usitatissimum Lus10010974.g I 0.688
Lus10004043.g Linum usitatissimum Lus10004043.g I 0.828
Lus10004042.g Linum usitatissimum Lus10004042.g I 0.799
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.664
Solyc08g079270.2 Solanum lycopersicum Solyc08g079270.2 I 0.798
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.788
GRMZM2G055158 Zea mays GRMZM2G055158 I 0.781
GRMZM2G048910 Zea mays GRMZM2G048910 I 0.781
GRMZM2G037650 Zea mays GRMZM2G037650 I 0.739
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.663
GLYMA18G04580 Glycine max GLYMA18G04580 I 0.822
GLYMA17G14291 Glycine max GLYMA17G14291 I 0.789
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.664
GLYMA14G39530 Glycine max GLYMA14G39530 I 0.822
GLYMA11G33620 Glycine max GLYMA11G33620 I 0.822
GLYMA11G03300 Glycine max GLYMA11G03300 I 0.789
GLYMA05G03780 Glycine max GLYMA05G03780 I 0.789
GLYMA02G41180 Glycine max GLYMA02G41180 I 0.822
GLYMA01G42050 Glycine max GLYMA01G42050 I 0.789
MYB85 Arabidopsis lyrata fgenesh2_kg.7__2034__AT4G22680.1 I 0.741
GRMZM2G104551 Zea mays GRMZM2G104551 I 0.715
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.884
GRMZM2G126566 Zea mays GRMZM2G126566 I 0.805
GSMUA_Achr7G18680_001 Musa acuminata GSMUA_Achr7G18680_001 I 0.702
GSMUA_Achr7G12520_001 Musa acuminata GSMUA_Achr7G12520_001 I 0.792
GSMUA_Achr7G05680_001 Musa acuminata GSMUA_Achr7G05680_001 I 0.727
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.671
GSMUA_Achr5G23110_001 Musa acuminata GSMUA_Achr5G23110_001 I 0.813
GSMUA_Achr5G05910_001 Musa acuminata GSMUA_Achr5G05910_001 I 0.765
GSMUA_Achr4G19880_001 Musa acuminata GSMUA_Achr4G19880_001 I 0.751
GSMUA_Achr2G07780_001 Musa acuminata GSMUA_Achr2G07780_001 I 0.668
GSMUA_Achr1G23990_001 Musa acuminata GSMUA_Achr1G23990_001 I 0.662
GSMUA_Achr1G22380_001 Musa acuminata GSMUA_Achr1G22380_001 I 0.721
GSMUA_Achr1G18610_001 Musa acuminata GSMUA_Achr1G18610_001 I 0.710
GSMUA_Achr10G29970_001 Musa acuminata GSMUA_Achr10G29970_001 I 0.768
GRMZM2G169356 Zea mays GRMZM2G169356 I 0.814
GRMZM2G138427 Zea mays GRMZM2G138427 I 0.784
MYB42 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002571 I 0.744
F775_29159 Aegilops tauschii F775_29159 I 0.774
Bo3g107740 Brassica oleracea Bo3g107740 I 0.737
Bo2g013190 Brassica oleracea Bo2g013190 I 0.776
Bo1g028520 Brassica oleracea Bo1g028520 I 0.741
BGIOSGA030727 Oryza indica BGIOSGA030727 I 0.854
BGIOSGA029380 Oryza indica BGIOSGA029380 I 0.739
BGIOSGA028709 Oryza indica BGIOSGA028709 I 0.824
BGIOSGA026529 Oryza indica BGIOSGA026529 I 0.742
BGIOSGA022649 Oryza indica BGIOSGA022649 I 0.781
BGIOSGA005676 Oryza indica BGIOSGA005676 I 0.790
MYB85 Arabidopsis thaliana AT4G22680 I 0.724
MYB42 Arabidopsis thaliana AT4G12350 I 0.744
MYB20 Arabidopsis thaliana AT1G66230 I 0.817
AMTR_s00091p00025820 Amborella trichopoda AMTR_s00091p00025820 I 0.756
AMTR_s00049p00074250 Amborella trichopoda AMTR_s00049p00074250 I 0.733
Bo3g165540 Brassica oleracea Bo3g165540 I 0.714
Bo6g099800 Brassica oleracea Bo6g099800 I 0.822
Bo7g108060 Brassica oleracea Bo7g108060 I 0.724
F775_19511 Aegilops tauschii F775_19511 I 0.765
F775_17058 Aegilops tauschii F775_17058 I 0.790
F775_13107 Aegilops tauschii F775_13107 I 0.824
BRADI4G36210 Brachypodium distachyon BRADI4G36210 I 0.726
BRADI4G29796 Brachypodium distachyon BRADI4G29796 I 0.794
BRADI3G56917 Brachypodium distachyon BRADI3G56917 I 0.790
BRADI3G42430 Brachypodium distachyon BRADI3G42430 I 0.754
BRADI3G36370 Brachypodium distachyon BRADI3G36370 I 0.880
BRADI1G44070 Brachypodium distachyon BRADI1G44070 I 0.718
Bra020837 Brassica rapa Bra020837 I 0.700
Bra019368 Brassica rapa Bra019368 I 0.724
Bra013633 Brassica rapa Bra013633 I 0.737
Bra004155 Brassica rapa Bra004155 I 0.822
Bo9g163020 Brassica oleracea Bo9g163020 I 0.752
AMTR_s00022p00252530 Amborella trichopoda AMTR_s00022p00252530 I 0.676
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.684
Sb04g024000 Sorghum bicolor Sb04g024000 I 0.663
Sb02g030900 Sorghum bicolor Sb02g030900 I 0.715
Sb02g024260 Sorghum bicolor Sb02g024260 I 0.761
Sb02g024250 Sorghum bicolor Sb02g024250 I 0.733
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.664
PRUPE_ppa021568mg Prunus persica PRUPE_ppa021568mg I 0.789
PRUPE_ppa011549mg Prunus persica PRUPE_ppa011549mg I 0.781
PRUPE_ppa009966mg Prunus persica PRUPE_ppa009966mg I 0.822
POPTR_0017s02850 Populus trichocarpa POPTR_0017s02850 I 0.805
POPTR_0015s14600 Populus trichocarpa POPTR_0015s14600 I 0.801
POPTR_0012s14540 Populus trichocarpa POPTR_0012s14540 I 0.792
POPTR_0004s08480 Populus trichocarpa POPTR_0004s08480 I 0.805
POPTR_0003s11360 Populus trichocarpa POPTR_0003s11360 I 0.789
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.664
Sb04g028850 Sorghum bicolor Sb04g028850 I 0.781
Sb07g024970 Sorghum bicolor Sb07g024970 I 0.727
Sb10g009330 Sorghum bicolor Sb10g009330 I 0.781
Solyc04g014470.2 Solanum lycopersicum Solyc04g014470.2 I 0.805
Si032544m.g Setaria italica Si032544m.g I 0.785
Si032498m.g Setaria italica Si032498m.g I 0.749
Si031939m.g Setaria italica Si031939m.g I 0.794
Si030750m.g Setaria italica Si030750m.g I 0.715
Si030711m.g Setaria italica Si030711m.g I 0.785
Si020225m.g Setaria italica Si020225m.g I 0.781
Si017851m.g Setaria italica Si017851m.g I 0.663
Si015412m.g Setaria italica Si015412m.g I 0.727
Si014144m.g Setaria italica Si014144m.g I 0.880
Si007017m.g Setaria italica Si007017m.g I 0.766
MYB99 Arabidopsis lyrata scaffold_802887.1 I 0.698
MYB43 Arabidopsis lyrata scaffold_601700.1 I 0.735
MYB20 Arabidopsis lyrata scaffold_201335.1 I 0.822
POPTR_0001s07830 Populus trichocarpa POPTR_0001s07830 I 0.789
PGSC0003DMG400015668 Solanum tuberosum PGSC0003DMG400015668 I 0.822
OLONG_005336 Oryza longistaminata OLONG_005336 I 0.739
OGLUM02G32070 Oryza glumaepatula OGLUM02G32070 I 0.790
OB09G24070 Oryza brachyantha OB09G24070 I 0.739
OB09G16260 Oryza brachyantha OB09G16260 I 0.845
OB08G29480 Oryza brachyantha OB08G29480 I 0.751
OB08G22860 Oryza brachyantha OB08G22860 I 0.827
OB06G19130 Oryza brachyantha OB06G19130 I 0.781
OB02G38450 Oryza brachyantha OB02G38450 I 0.790
MTR_5g078140 Medicago truncatula MTR_5g078140 I 0.822
MTR_4g102380 Medicago truncatula MTR_4g102380 I 0.793
MTR_3g065440 Medicago truncatula MTR_3g065440 I 0.822
MLOC_6696 Hordeum vulgare MLOC_6696 I 0.754
MLOC_50944 Hordeum vulgare MLOC_50944 I 0.810
MLOC_14021 Hordeum vulgare MLOC_14021 I 0.774
OPUNC08G12780 Oryza punctata OPUNC08G12780 I 0.820
ORGLA02G0269000 Oryza glaberrima ORGLA02G0269000 I 0.790
ORGLA06G0093500 Oryza glaberrima ORGLA06G0093500 I 0.781
PGSC0003DMG400004780 Solanum tuberosum PGSC0003DMG400004780 I 0.798
OS09G0532900 Oryza sativa OS09G0532900 I 0.739
OS09G0401000 Oryza sativa OS09G0401000 I 0.854
OS06G0258000 Oryza sativa OS06G0258000 I 0.781
OS02G0732600 Oryza sativa OS02G0732600 I 0.790
ORUFI09G18880 Oryza rufipogon ORUFI09G18880 I 0.680
ORUFI09G10320 Oryza rufipogon ORUFI09G10320 I 0.854
ORUFI08G25210 Oryza rufipogon ORUFI08G25210 I 0.742
ORUFI06G10280 Oryza rufipogon ORUFI06G10280 I 0.781
ORUFI02G33090 Oryza rufipogon ORUFI02G33090 I 0.790
ORGLA09G0137500 Oryza glaberrima ORGLA09G0137500 I 0.739
ORGLA09G0071400 Oryza glaberrima ORGLA09G0071400 I 0.854
ORGLA08G0217800 Oryza glaberrima ORGLA08G0217800 I 0.742
ORGLA08G0134400 Oryza glaberrima ORGLA08G0134400 I 0.824
LPERR08G19430 Leersia perrieri LPERR08G19430 I 0.738