CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Fa00885
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Fa00885
T289182_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH
DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.758
0.849
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD
HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.758
0.849
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW
WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.745
0.871
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH
DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.745
0.871
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN
NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.724
0.796
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD
HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.724
0.796
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fa00885.1.p
Myb
81
127
RGHWRPAEDAKLRELVALFGPQNWNLIAERLDGRSGKSCRLRWFNQL
Pavir.Fa00885.1.p
Myb
133
178
KRPFTDEEEERLMAAHRFYGNKWAMIARLFPGRTDNAVKNHWHVIM
Pavir.Fa00885.2.p
Myb
81
127
RGHWRPAEDAKLRELVALFGPQNWNLIAERLDGRSGKSCRLRWFNQL
Pavir.Fa00885.2.p
Myb
133
178
KRPFTDEEEERLMAAHRFYGNKWAMIARLFPGRTDNAVKNHWHVIM
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
385 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy