Pavir.Fb00789 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fb00789 T289193_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.809 0.851
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.809 0.851
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.809 0.851
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.809 0.851
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.757 0.830
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.757 0.830
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.743 0.787
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.737 0.766
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.737 0.766
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.737 0.766
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.731 0.809
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.731 0.809
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.731 0.809
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.720 0.787
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.720 0.787
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.720 0.787
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.720 0.787
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.666 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00789.1.p Myb 120 171

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

684 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02791 Aegilops tauschii F775_02791 I 0.000
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.000
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.000
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.000
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.000
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.000
SPL6 Arabidopsis thaliana AT1G69170 I 0.000
SPL5 Arabidopsis thaliana AT3G15270 D 0.000
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.000
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.000
Bo3g042890 Brassica oleracea Bo3g042890 I 0.000
Bo6g108620 Brassica oleracea Bo6g108620 N 0.000
Bra038324 Brassica rapa Bra038324 I 0.000
Bra021880 Brassica rapa Bra021880 I 0.000
Bra004363 Brassica rapa Bra004363 N 0.000
PK18312.1 Cannabis sativa PK18312.1 I 0.000
PK03565.1 Cannabis sativa PK03565.1 I 0.000
PK17790.1 Cannabis sativa PK17790.1 I 0.000
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.000
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.000
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.000
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.000
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.000
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.000
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.000
Ca_10879 Cicer arietinum Ca_10879 I 0.000
Ca_19449 Cicer arietinum Ca_19449 I 0.000
Ca_24655 Cicer arietinum Ca_24655 I 0.000
Cla019331 Citrullus lanatus Cla019331 I 0.000
Cla009788 Citrullus lanatus Cla009788 I 0.000
Cla018827 Citrullus lanatus Cla018827 I 0.000
Cla021411 Citrullus lanatus Cla021411 I 0.000
Cla001541 Citrullus lanatus Cla001541 I 0.000
Cla002263 Citrullus lanatus Cla002263 I 0.000
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.000
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.000
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.000
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.000
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.000
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.000
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.000
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.000
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.000
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.000
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.000
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.000
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.000
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.000
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.000
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.000
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.000
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.000
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.000
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.000
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.000
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.000
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.000
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.000
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.000
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.000
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.000
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.000
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.000
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.000
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.000
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.000
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.000
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.000
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.000
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.000
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.000
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.000
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.000
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.000
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.000
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.000
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.000
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.000
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.000
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.000
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.000
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.000
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.000
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.000
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.000
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.000
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.000
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.000
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.000
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.000
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.000
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.000
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.000
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.000
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.000
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.000
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.000
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.000
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.000
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.000
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.000
MDP0000193702 Malus domestica MDP0000193702 I 0.000
MDP0000865739 Malus domestica MDP0000865739 I 0.000
MDP0000778465 Malus domestica MDP0000778465 I 0.000
MDP0000589558 Malus domestica MDP0000589558 I 0.000
MDP0000171877 Malus domestica MDP0000171877 I 0.000
MDP0000149339 Malus domestica MDP0000149339 I 0.000
MDP0000119458 Malus domestica MDP0000119458 I 0.000
MDP0000146640 Malus domestica MDP0000146640 I 0.000
MDP0000246046 Malus domestica MDP0000246046 I 0.000
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.000
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.000
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.000
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.000
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.000
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.000
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.000
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.000
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.000
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.000
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.000
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.000
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.000
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.000
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.000
mgf001202m Mimulus guttatus mgf001202m I 0.000
mgf001295m Mimulus guttatus mgf001295m I 0.000
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.000
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.000
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.000
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.000
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.000
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.000
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.000
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.000
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.000
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.000
OBART07G15570 Oryza barthii OBART07G15570 I 0.000
OBART04G20940 Oryza barthii OBART04G20940 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.000
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.000
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.000
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.000
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.000
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.000
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.000
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.000
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.000
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.000
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.000
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.000
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.000
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.000
SPL19 Oryza sativa OS11G0496600 I 0.000
SPL7 Oryza sativa OS04G0551500 I 0.000
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.000
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.000
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.000
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.000
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.000
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.000
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.000
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.000
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.000
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.000
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.000
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.000
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.000
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.000
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.000
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.000
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.000
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.000
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.000
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.000
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.000
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.000
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.000
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.000
Pm014154 Prunus mume Pm014154 I 0.000
Pm025028 Prunus mume Pm025028 I 0.000
Pm030597 Prunus mume Pm030597 I 0.000
Pm010075 Prunus mume Pm010075 I 0.000
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.000
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.000
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.000
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.000
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.000
30174.m009082 Ricinus communis 30174.m009082 I 0.000
30138.m003942 Ricinus communis 30138.m003942 I 0.000
29269.m000250 Ricinus communis 29269.m000250 I 0.000
30174.m008805 Ricinus communis 30174.m008805 I 0.000
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.000
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.000
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.000
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.000
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.000
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.000
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.000
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.000
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.000
SELMODRAFT_28625 Selaginella moellendorffii SELMODRAFT_28625 I 0.000
SELMODRAFT_28626 Selaginella moellendorffii SELMODRAFT_28626 I 0.000
Si010262m.g Setaria italica Si010262m.g I 0.000
Si013747m.g Setaria italica Si013747m.g N 0.000
Si026656m.g Setaria italica Si026656m.g I 0.000
Si001804m.g Setaria italica Si001804m.g I 0.000
Si032170m.g Setaria italica Si032170m.g I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.000
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.000
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.000
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.000
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.000
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.000
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.000
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.000
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.000
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.000
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.000
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.000
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.000
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.000
TCM_005620 Theobroma cacao TCM_005620 I 0.000
TCM_014330 Theobroma cacao TCM_014330 I 0.000
TCM_024873 Theobroma cacao TCM_024873 I 0.000
TCM_031595 Theobroma cacao TCM_031595 I 0.000
TCM_011483 Theobroma cacao TCM_011483 I 0.000
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.000
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.000
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.000
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.000
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.000
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.000
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.000
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.000
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.000
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.000