Pavir.Fb01648 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fb01648 T289199_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB30
M07089_2.00
Arabidopsis thaliana
NHHHCAACYACYWHH

DDWRGTRGTTGDDDN
Dap-seq
OMalley et al.(2016)
MYB30_col_a
0.785 0.871
MYB30
M07090_2.00
Arabidopsis thaliana
HHHYYHCCAACYAMY

RKTRGTTGGDRRDDD
Dap-seq
OMalley et al.(2016)
MYB30_colamp_a
0.785 0.871
MYB94
M02298_2.00
Arabidopsis thaliana
DACCGGTH

DACCGGTH
PBM
Weirauch et al.(2014)
pTH7085
0.776 0.860
MYB94
M07094_2.00
Arabidopsis thaliana
HHNYHYCAACYACYWHHNN

NNDDWRGTRGTTGRDRNDD
Dap-seq
OMalley et al.(2016)
MYB94_col_b
0.776 0.860
MYB96
M07153_2.00
Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN

NDNWRDTRGTTGGDDRDDDDD
Dap-seq
OMalley et al.(2016)
MYB96_colamp_a
0.776 0.860
MYB96
M07154_2.00
Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH

DDDDDTDGKTGGNDGKTR
Dap-seq
OMalley et al.(2016)
MYB96_col_b
0.776 0.860
MYB60
M07001_2.00
Arabidopsis thaliana
HNNHYYCAACYACYWHHNN

NNDDWRGTRGTTGRRDNND
Dap-seq
OMalley et al.(2016)
MYB60_col
0.772 0.849
ATY13
M07035_2.00
Arabidopsis thaliana
HAMCHMCCAMCHAHH

DDTDGKTGGKDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_col_a
0.754 0.860
ATY13
M07036_2.00
Arabidopsis thaliana
HAMCHHCCAACHAHH

DDTDGTTGGDDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_colamp_a
0.754 0.860
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01648.1.p Myb 14 61
Pavir.Fb01648.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

310 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29848.m004652 Ricinus communis 29848.m004652 N 0.000
Aquca_001_00810 Aquilegia coerulea Aquca_001_00810 N 0.000
OCP3 Arabidopsis thaliana AT5G11270 N 0.000
BGIOSGA023211 Oryza indica BGIOSGA023211 N 0.000
Bo9g171420 Brassica oleracea Bo9g171420 N 0.000
Bostr.23997s0022 Boechera stricta Bostr.23997s0022 N 0.000
Bra008975 Brassica rapa Bra008975 N 0.000
BRADI1G36770 Brachypodium distachyon BRADI1G36770 N 0.000
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N 0.000
Cagra.7526s0026 Capsella grandiflora Cagra.7526s0026 N 0.000
Carubv10002492m.g Capsella rubella Carubv10002492m.g N 0.000
cassava18449.valid.m1 Manihot esculenta cassava18449.valid.m1 N 0.000
chr1.CM0442.170.nd Lotus japonicus chr1.CM0442.170.nd N 0.000
Ciclev10010768m.g Citrus clementina Ciclev10010768m.g N 0.000
Cla021272 Citrullus lanatus Cla021272 N 0.000
Cucsa.310460 Cucumis sativus Cucsa.310460 N 0.000
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N 0.000
OCP3 Arabidopsis lyrata fgenesh2_kg.6__1093__AT5G11270.1 N 0.000
gene11668-v1.0-hybrid Fragaria vesca gene11668-v1.0-hybrid N 0.000
GLYMA04G07230 Glycine max GLYMA04G07230 N 0.000
GLYMA06G07330 Glycine max GLYMA06G07330 N 0.000
Gorai.004G274200 Gossypium raimondii Gorai.004G274200 N 0.000
GSMUA_Achr7G08370_001 Musa acuminata GSMUA_Achr7G08370_001 N 0.000
Lus10002029.g Linum usitatissimum Lus10002029.g N 0.000
Lus10002899.g Linum usitatissimum Lus10002899.g N 0.000
MDP0000202143 Malus domestica MDP0000202143 N 0.000
mgf000632m Mimulus guttatus mgf000632m N 0.000
MLOC_45474 Hordeum vulgare MLOC_45474 N 0.000
OB06G27850 Oryza brachyantha OB06G27850 N 0.000
OBART06G20210 Oryza barthii OBART06G20210 N 0.000
OGLUM06G21270 Oryza glumaepatula OGLUM06G21270 N 0.000
OLONG_013537 Oryza longistaminata OLONG_013537 N 0.000
OMERI06G20820 Oryza meridionalis OMERI06G20820 N 0.000
ONIVA06G23990 Oryza nivara ONIVA06G23990 N 0.000
OPUNC06G18430 Oryza punctata OPUNC06G18430 N 0.000
orange1.1g040593m.g Citrus sinensis orange1.1g040593m.g N 0.000
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N 0.000
OS06G0601000 Oryza sativa OS06G0601000 N 0.000
PGSC0003DMG400020785 Solanum tuberosum PGSC0003DMG400020785 N 0.000
PK00680.1 Cannabis sativa PK00680.1 N 0.000
Pm004594 Prunus mume Pm004594 N 0.000
PRUPE_ppa007560mg Prunus persica PRUPE_ppa007560mg N 0.000
Solyc08g061140.2 Solanum lycopersicum Solyc08g061140.2 N 0.000
TCM_038389 Theobroma cacao TCM_038389 N 0.000
Thhalv10013990m.g Eutrema salsugineum Thhalv10013990m.g N 0.000
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N 0.000
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N 0.000
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N 0.000
OCP3 Vitis vinifera VIT_04s0008g05190 N 0.000