Pavir.Fb01648 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fb01648 T289199_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB30
M07089_2.00
Arabidopsis thaliana
NHHHCAACYACYWHH

DDWRGTRGTTGDDDN
Dap-seq
OMalley et al.(2016)
MYB30_col_a
0.785 0.871
MYB30
M07090_2.00
Arabidopsis thaliana
HHHYYHCCAACYAMY

RKTRGTTGGDRRDDD
Dap-seq
OMalley et al.(2016)
MYB30_colamp_a
0.785 0.871
MYB94
M02298_2.00
Arabidopsis thaliana
DACCGGTH

DACCGGTH
PBM
Weirauch et al.(2014)
pTH7085
0.776 0.860
MYB94
M07094_2.00
Arabidopsis thaliana
HHNYHYCAACYACYWHHNN

NNDDWRGTRGTTGRDRNDD
Dap-seq
OMalley et al.(2016)
MYB94_col_b
0.776 0.860
MYB96
M07153_2.00
Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN

NDNWRDTRGTTGGDDRDDDDD
Dap-seq
OMalley et al.(2016)
MYB96_colamp_a
0.776 0.860
MYB96
M07154_2.00
Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH

DDDDDTDGKTGGNDGKTR
Dap-seq
OMalley et al.(2016)
MYB96_col_b
0.776 0.860
MYB60
M07001_2.00
Arabidopsis thaliana
HNNHYYCAACYACYWHHNN

NNDDWRGTRGTTGRRDNND
Dap-seq
OMalley et al.(2016)
MYB60_col
0.772 0.849
ATY13
M07035_2.00
Arabidopsis thaliana
HAMCHMCCAMCHAHH

DDTDGKTGGKDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_col_a
0.754 0.860
ATY13
M07036_2.00
Arabidopsis thaliana
HAMCHHCCAACHAHH

DDTDGTTGGDDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_colamp_a
0.754 0.860
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01648.1.p Myb 14 61
Pavir.Fb01648.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

310 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000005389 Ailuropoda melanoleuca ENSAMEG00000005389 I 0.000
ENSCSAG00000008216 Chlorocebus sabaeus ENSCSAG00000008216 I 0.000
ENSMMUP00000031827 Macaca fascicularis ENSMMUP00000031827 I 0.000
ENSNLEG00000010935 Nomascus leucogenys ENSNLEG00000010935 I 0.000
ENSOARG00000012596 Ovis aries ENSOARG00000012596 I 0.000
ENSPANG00000009699 Papio anubis ENSPANG00000009699 I 0.000
ENSSSCG00000005893 Sus scrofa ENSSSCG00000005893 I 0.000
ZNF34 Tursiops truncatus ENSTTRG00000013859 I 0.000
ZNF34 Sorex araneus ENSSARG00000004570 I 0.000
ZNF34 Pan troglodytes ENSPTRG00000022804 I 0.000
ZNF34 Canis familiaris ENSCAFG00000031585 I 0.000
ZNF34 Macaca mulatta ENSMMUG00000014308 I 0.000
ZNF34 Bos taurus ENSBTAG00000012353 I 0.000
ZNF34 Loxodonta africana ENSLAFG00000005941 I 0.000
ZNF34 Gorilla gorilla ENSGGOG00000003075 I 0.000
ZNF34 Homo sapiens ENSG00000196378 D 0.000
ZNF34 Equus caballus ENSECAG00000001625 I 0.000
ZNF34 Dasypus novemcinctus ENSDNOG00000041215 I 0.000
ZNF34 Microcebus murinus ENSMICG00000012932 I 0.000