CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Fb01648
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Fb01648
T289199_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB30
M07089_2.00
Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN
Dap-seq
OMalley et al.(2016)
MYB30_col_a
0.785
0.871
MYB30
M07090_2.00
Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD
Dap-seq
OMalley et al.(2016)
MYB30_colamp_a
0.785
0.871
MYB94
M02298_2.00
Arabidopsis thaliana
DACCGGTH
DACCGGTH
PBM
Weirauch et al.(2014)
pTH7085
0.776
0.860
MYB94
M07094_2.00
Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD
Dap-seq
OMalley et al.(2016)
MYB94_col_b
0.776
0.860
MYB96
M07153_2.00
Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD
Dap-seq
OMalley et al.(2016)
MYB96_colamp_a
0.776
0.860
MYB96
M07154_2.00
Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR
Dap-seq
OMalley et al.(2016)
MYB96_col_b
0.776
0.860
MYB60
M07001_2.00
Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND
Dap-seq
OMalley et al.(2016)
MYB60_col
0.772
0.849
ATY13
M07035_2.00
Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_col_a
0.754
0.860
ATY13
M07036_2.00
Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_colamp_a
0.754
0.860
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fb01648.1.p
Myb
14
61
KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCNKSCRLRWTNYL
Pavir.Fb01648.1.p
Myb
67
112
RGNFSVQEEKLIIHLQALLGNRWAAIASYLPDRTDNDIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
310 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000005389
Ailuropoda melanoleuca
ENSAMEG00000005389
I
0.000
ENSCSAG00000008216
Chlorocebus sabaeus
ENSCSAG00000008216
I
0.000
ENSMMUP00000031827
Macaca fascicularis
ENSMMUP00000031827
I
0.000
ENSNLEG00000010935
Nomascus leucogenys
ENSNLEG00000010935
I
0.000
ENSOARG00000012596
Ovis aries
ENSOARG00000012596
I
0.000
ENSPANG00000009699
Papio anubis
ENSPANG00000009699
I
0.000
ENSSSCG00000005893
Sus scrofa
ENSSSCG00000005893
I
0.000
ZNF34
Tursiops truncatus
ENSTTRG00000013859
I
0.000
ZNF34
Sorex araneus
ENSSARG00000004570
I
0.000
ZNF34
Pan troglodytes
ENSPTRG00000022804
I
0.000
ZNF34
Canis familiaris
ENSCAFG00000031585
I
0.000
ZNF34
Macaca mulatta
ENSMMUG00000014308
I
0.000
ZNF34
Bos taurus
ENSBTAG00000012353
I
0.000
ZNF34
Loxodonta africana
ENSLAFG00000005941
I
0.000
ZNF34
Gorilla gorilla
ENSGGOG00000003075
I
0.000
ZNF34
Homo sapiens
ENSG00000196378
D
0.000
ZNF34
Equus caballus
ENSECAG00000001625
I
0.000
ZNF34
Dasypus novemcinctus
ENSDNOG00000041215
I
0.000
ZNF34
Microcebus murinus
ENSMICG00000012932
I
0.000