CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga00879
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ga00879
T289212_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.697
0.720
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.697
0.720
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD
HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.690
0.699
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.690
0.699
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.690
0.699
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga00879.1.p
Myb
15
62
KGLWSPEEDEKLRDFILRHGHGCWSALPAKAGLQRNGKSCRLRWINYL
Pavir.Ga00879.1.p
Myb
68
113
HGMFSPEEEETVMSLHAKMGNKWSQIARHLPGRTDNEVKNYWNSYL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
495 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy