Pavir.Ga01101 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ga01101 T289213_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC

GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.666 0.753
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.663 0.731
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH

DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.663 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01101.1.p Myb 90 137
Pavir.Ga01101.1.p Myb 143 188

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_43556 Aegilops tauschii F775_43556 I 0.000
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.000
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.000
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.000
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.000
GATA15 Arabidopsis thaliana AT3G06740 D 0.000
GATA17 Arabidopsis thaliana AT3G16870 I 0.000
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.000
GATA16 Arabidopsis thaliana AT5G49300 D 0.000
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.000
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.000
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.000
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.000
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.000
Bo00847s050 Brassica oleracea Bo00847s050 I 0.000
Bo7g104200 Brassica oleracea Bo7g104200 I 0.000
Bo7g092660 Brassica oleracea Bo7g092660 I 0.000
Bo3g068560 Brassica oleracea Bo3g068560 I 0.000
Bo1g147740 Brassica oleracea Bo1g147740 I 0.000
Bo1g122970 Brassica oleracea Bo1g122970 I 0.000
Bo1g055120 Brassica oleracea Bo1g055120 I 0.000
Bo5g123610 Brassica oleracea Bo5g123610 I 0.000
Bra037421 Brassica rapa Bra037421 I 0.000
Bra040288 Brassica rapa Bra040288 I 0.000
Bra033533 Brassica rapa Bra033533 I 0.000
Bra022184 Brassica rapa Bra022184 I 0.000
Bra021209 Brassica rapa Bra021209 I 0.000
Bra020650 Brassica rapa Bra020650 I 0.000
Bra012742 Brassica rapa Bra012742 I 0.000
PK18820.1 Cannabis sativa PK18820.1 I 0.000
PK21934.1 Cannabis sativa PK21934.1 I 0.000
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.000
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.000
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.000
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.000
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.000
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.000
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.000
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.000
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.000
Ca_02992 Cicer arietinum Ca_02992 I 0.000
Cla009422 Citrullus lanatus Cla009422 I 0.000
Cla022104 Citrullus lanatus Cla022104 I 0.000
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.000
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.000
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.000
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.000
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.000
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.000
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.000
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.000
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.000
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.000
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.000
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.000
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.000
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.000
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.000
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.000
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.000
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.000
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.000
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.000
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.000
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.000
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.000
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.000
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.000
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.000
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.000
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.000
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.000
mgf003937m Mimulus guttatus mgf003937m I 0.000
GSMUA_Achr2G16730_001 Musa acuminata GSMUA_Achr2G16730_001 I 0.000
OBART03G39750 Oryza barthii OBART03G39750 I 0.000
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.000
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.000
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.000
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.000
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.000
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.000
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.000
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.000
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.000
OS03G0831200 Oryza sativa OS03G0831200 I 0.000
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.000
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.000
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.000
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.000
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.000
Pm008287 Prunus mume Pm008287 I 0.000
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.000
29889.m003248 Ricinus communis 29889.m003248 I 0.000
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.000
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.000
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.000
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.000
Si037892m.g Setaria italica Si037892m.g I 0.000
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.000
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.000
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.000
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.000
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.000
TCM_021303 Theobroma cacao TCM_021303 I 0.000
TCM_004753 Theobroma cacao TCM_004753 I 0.000
TCM_026732 Theobroma cacao TCM_026732 I 0.000
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.000
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.000
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.000