Pavir.Gb00055 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb00055 T289221_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00055.1.p Myb 125 170

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.887
Si022762m.g Setaria italica Si022762m.g N 0.878
OB04G36550 Oryza brachyantha OB04G36550 N 0.793
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.791
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.784
OMERI04G25000 Oryza meridionalis OMERI04G25000 N 0.772
OBART04G29570 Oryza barthii OBART04G29570 N 0.772
ORGLA04G0258700 Oryza glaberrima ORGLA04G0258700 N 0.772
BGIOSGA014092 Oryza indica BGIOSGA014092 N 0.772
ORUFI04G31270 Oryza rufipogon ORUFI04G31270 N 0.772
ONIVA04G28100 Oryza nivara ONIVA04G28100 N 0.772
OS04G0676700 Oryza sativa OS04G0676700 N 0.772
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.759
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.756
OGLUM04G29490 Oryza glumaepatula OGLUM04G29490 N 0.752
30131.m007263 Ricinus communis 30131.m007263 I 0.751
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.751
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.750
mgf009460m Mimulus guttatus mgf009460m I 0.750
OPUNC04G27130 Oryza punctata OPUNC04G27130 N 0.748
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.746
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.745
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.745
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.745
PK13672.1 Cannabis sativa PK13672.1 I 0.742
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.742
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.740
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.740
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.740
TCM_007672 Theobroma cacao TCM_007672 I 0.740
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.740
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.736
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.733
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.731
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.730
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.729
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.724
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.722
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.710
Pm006046 Prunus mume Pm006046 I 0.706
LPERR04G25100 Leersia perrieri LPERR04G25100 N 0.704
Cla020348 Citrullus lanatus Cla020348 I 0.704
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.703
Cla009230 Citrullus lanatus Cla009230 I 0.703
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.703
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.703
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.702
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.702
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.698
Ca_05454 Cicer arietinum Ca_05454 I 0.697
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.697
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.693
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.693
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.692
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.690
GSMUA_Achr9G21870_001 Musa acuminata GSMUA_Achr9G21870_001 N 0.688
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.688
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.686
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.683
Ca_19000 Cicer arietinum Ca_19000 I 0.683
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.677
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.677
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.671
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.670
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.663
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N 0.663
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.663
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.662