Pavir.Gb00812 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb00812 T289227_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.677 0.785
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.677 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00812.1.p Myb 15 64
Pavir.Gb00812.1.p Myb 70 115

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_005_00496 Aquilegia coerulea Aquca_005_00496 I 0.674
MYB107 Arabidopsis thaliana AT3G02940 D 0.677
BGIOSGA014443 Oryza indica BGIOSGA014443 I 0.828
Bo1g155040 Brassica oleracea Bo1g155040 I 0.677
Bo5g150350 Brassica oleracea Bo5g150350 I 0.672
Bostr.19046s0006 Boechera stricta Bostr.19046s0006 I 0.677
Bra021382 Brassica rapa Bra021382 I 0.677
Bra032028 Brassica rapa Bra032028 I 0.677
Cagra.1194s0007 Capsella grandiflora Cagra.1194s0007 I 0.677
Carubv10016434m.g Capsella rubella Carubv10016434m.g I 0.677
cassava44907.m1 Manihot esculenta cassava44907.m1 I 0.671
Ca_11832 Cicer arietinum Ca_11832 I 0.669
F775_02773 Aegilops tauschii F775_02773 I 0.789
MYB107 Arabidopsis lyrata fgenesh2_kg.3__241__AT3G02940.1 I 0.677
gene12564-v1.0-hybrid Fragaria vesca gene12564-v1.0-hybrid I 0.679
GRMZM2G081557 Zea mays GRMZM2G081557 N 0.854
GSMUA_Achr4G19030_001 Musa acuminata GSMUA_Achr4G19030_001 I 0.661
LPERR04G19330 Leersia perrieri LPERR04G19330 I 0.770
OB04G30520 Oryza brachyantha OB04G30520 I 0.825
OB06G10740 Oryza brachyantha OB06G10740 I 0.674
OBART04G23600 Oryza barthii OBART04G23600 I 0.828
OGLUM04G23540 Oryza glumaepatula OGLUM04G23540 I 0.828
ONIVA04G19830 Oryza nivara ONIVA04G19830 I 0.828
OPUNC04G21140 Oryza punctata OPUNC04G21140 I 0.828
ORGLA04G0201500 Oryza glaberrima ORGLA04G0201500 I 0.828
ORUFI04G25320 Oryza rufipogon ORUFI04G25320 I 0.828
OS04G0593200 Oryza sativa OS04G0593200 I 0.828
Pavir.Da02398 Panicum virgatum Pavir.Da02398 I 0.688
Pavir.Ga00758 Panicum virgatum Pavir.Ga00758 I 0.909
PK05754.1 Cannabis sativa PK05754.1 I 0.662
Pm018056 Prunus mume Pm018056 I 0.669
PRUPE_ppa007268mg Prunus persica PRUPE_ppa007268mg I 0.669
Si012660m.g Setaria italica Si012660m.g N 0.892
Thhalv10022405m.g Eutrema salsugineum Thhalv10022405m.g I 0.677
Traes_2AL_1D7D3D0DE Triticum aestivum Traes_2AL_1D7D3D0DE N 0.703
Traes_2AL_5EE86C5BC Triticum aestivum Traes_2AL_5EE86C5BC I 0.764
Traes_2AL_B01AE830F Triticum aestivum Traes_2AL_B01AE830F I 0.764
Traes_2AL_E5B3B79F7 Triticum aestivum Traes_2AL_E5B3B79F7 I 0.795
Traes_2AL_FBC0ED0EE Triticum aestivum Traes_2AL_FBC0ED0EE N 0.747
Traes_2BL_560CCE975 Triticum aestivum Traes_2BL_560CCE975 I 0.762
Traes_2BL_88BBF0441 Triticum aestivum Traes_2BL_88BBF0441 N 0.707
Traes_2BL_C843D1851 Triticum aestivum Traes_2BL_C843D1851 N 0.723
Traes_2DL_25FD0FFB4 Triticum aestivum Traes_2DL_25FD0FFB4 I 0.745
Traes_2DL_54D11D5E7 Triticum aestivum Traes_2DL_54D11D5E7 I 0.784
Traes_2DL_6BD0572DF Triticum aestivum Traes_2DL_6BD0572DF I 0.745
TRIUR3_26633 Triticum urartu TRIUR3_26633 I 0.741