Pavir.Gb01051 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb01051 T289230_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.716 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01051.1.p Myb 22 73
Pavir.Gb01051.2.p Myb 22 73
Pavir.Gb01051.3.p Myb 22 73
Pavir.Gb01051.4.p Myb 22 73

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J09702 Panicum virgatum Pavir.J09702 I 0.898
Si011884m.g Setaria italica Si011884m.g I 0.898
Sb06g025600 Sorghum bicolor Sb06g025600 I 0.896
OGLUM02G28020 Oryza glumaepatula OGLUM02G28020 I 0.840
ORGLA02G0236600 Oryza glaberrima ORGLA02G0236600 I 0.840
OBART02G27470 Oryza barthii OBART02G27470 I 0.840
ONIVA02G30300 Oryza nivara ONIVA02G30300 I 0.840
OLONG_000346 Oryza longistaminata OLONG_000346 I 0.840
OMERI02G26760 Oryza meridionalis OMERI02G26760 I 0.840
OPUNC02G25130 Oryza punctata OPUNC02G25130 I 0.840
ORUFI02G28930 Oryza rufipogon ORUFI02G28930 I 0.840
BGIOSGA008790 Oryza indica BGIOSGA008790 I 0.840
TRIUR3_18158 Triticum urartu TRIUR3_18158 I 0.839
GRMZM2G069525 Zea mays GRMZM2G069525 I 0.838
F775_04264 Aegilops tauschii F775_04264 I 0.831
GRMZM2G090230 Zea mays GRMZM2G090230 I 0.827
LPERR02G22340 Leersia perrieri LPERR02G22340 I 0.822
Ciclev10018145m.g Citrus clementina Ciclev10018145m.g I 0.804
LPERR04G17940 Leersia perrieri LPERR04G17940 I 0.802
OB04G28940 Oryza brachyantha OB04G28940 I 0.802
OB02G34860 Oryza brachyantha OB02G34860 I 0.787
OLONG_016687 Oryza longistaminata OLONG_016687 I 0.767
ONIVA04G20480 Oryza nivara ONIVA04G20480 I 0.767
OMERI04G18450 Oryza meridionalis OMERI04G18450 I 0.767
ORUFI04G23540 Oryza rufipogon ORUFI04G23540 I 0.767
OPUNC04G19690 Oryza punctata OPUNC04G19690 I 0.767
BGIOSGA016936 Oryza indica BGIOSGA016936 I 0.767
OS04G0566600 Oryza sativa OS04G0566600 I 0.767
OGLUM04G21960 Oryza glumaepatula OGLUM04G21960 I 0.767
ORGLA04G0189700 Oryza glaberrima ORGLA04G0189700 I 0.767
OBART04G21930 Oryza barthii OBART04G21930 I 0.767
MLOC_67081 Hordeum vulgare MLOC_67081 N 0.752
orange1.1g043383m.g Citrus sinensis orange1.1g043383m.g I 0.751
F775_04777 Aegilops tauschii F775_04777 I 0.742
Traes_7AL_9A1395EC7 Triticum aestivum Traes_7AL_9A1395EC7 I 0.742
TRIUR3_34172 Triticum urartu TRIUR3_34172 I 0.742
F775_03870 Aegilops tauschii F775_03870 I 0.742
Pavir.J33581 Panicum virgatum Pavir.J33581 I 0.736
Si039234m.g Setaria italica Si039234m.g I 0.736
Traes_1BL_E2629CBC1 Triticum aestivum Traes_1BL_E2629CBC1 I 0.736
Sb10g026930 Sorghum bicolor Sb10g026930 N 0.728
OB06G32040 Oryza brachyantha OB06G32040 N 0.728
Si007179m.g Setaria italica Si007179m.g N 0.728
ORUFI06G26110 Oryza rufipogon ORUFI06G26110 N 0.728
ORGLA06G0204400 Oryza glaberrima ORGLA06G0204400 N 0.728
Pavir.Ab02674 Panicum virgatum Pavir.Ab02674 I 0.728
Pavir.Da00200 Panicum virgatum Pavir.Da00200 N 0.728
OLONG_026929 Oryza longistaminata OLONG_026929 N 0.728
ONIVA06G30620 Oryza nivara ONIVA06G30620 N 0.728
Pavir.Aa00827 Panicum virgatum Pavir.Aa00827 I 0.728
OMERI06G24530 Oryza meridionalis OMERI06G24530 N 0.728
OPUNC06G22010 Oryza punctata OPUNC06G22010 N 0.728
OGLUM06G25550 Oryza glumaepatula OGLUM06G25550 N 0.728
OBART06G24290 Oryza barthii OBART06G24290 N 0.728
Pavir.Db00422 Panicum virgatum Pavir.Db00422 N 0.728
LPERR06G20200 Leersia perrieri LPERR06G20200 N 0.728
AMTR_s00044p00042560 Amborella trichopoda AMTR_s00044p00042560 I 0.728
GRMZM2G454449 Zea mays GRMZM2G454449 N 0.728
Pm010236 Prunus mume Pm010236 I 0.726
mgf019744m Mimulus guttatus mgf019744m I 0.726
OS06G0670300 Oryza sativa OS06G0670300 N 0.723
GSMUA_Achr7G03510_001 Musa acuminata GSMUA_Achr7G03510_001 I 0.723
BGIOSGA023442 Oryza indica BGIOSGA023442 N 0.723
Traes_7DL_FEA7D3672 Triticum aestivum Traes_7DL_FEA7D3672 N 0.721
MLOC_67085 Hordeum vulgare MLOC_67085 N 0.721
MLOC_53958 Hordeum vulgare MLOC_53958 N 0.721
Traes_7AL_BF6FD97DA Triticum aestivum Traes_7AL_BF6FD97DA N 0.721
MLOC_56821 Hordeum vulgare MLOC_56821 I 0.721
F775_02595 Aegilops tauschii F775_02595 N 0.721
MLOC_53840 Hordeum vulgare MLOC_53840 N 0.721
OMERI03G02220 Oryza meridionalis OMERI03G02220 I 0.718
OLONG_011732 Oryza longistaminata OLONG_011732 I 0.718
ORGLA03G0021400 Oryza glaberrima ORGLA03G0021400 I 0.718
ONIVA10G19340 Oryza nivara ONIVA10G19340 I 0.718
OPUNC10G15550 Oryza punctata OPUNC10G15550 I 0.718
OLONG_004539 Oryza longistaminata OLONG_004539 I 0.718
Si036127m.g Setaria italica Si036127m.g I 0.718
OMERI10G13750 Oryza meridionalis OMERI10G13750 I 0.718
BGIOSGA011527 Oryza indica BGIOSGA011527 I 0.718
ONIVA03G01980 Oryza nivara ONIVA03G01980 I 0.718
Pavir.Ia04483 Panicum virgatum Pavir.Ia04483 I 0.718
OB10G24340 Oryza brachyantha OB10G24340 I 0.718
OBART03G02370 Oryza barthii OBART03G02370 I 0.718
ORUFI10G18320 Oryza rufipogon ORUFI10G18320 I 0.718
Sb01g048420 Sorghum bicolor Sb01g048420 I 0.718
LPERR03G02180 Leersia perrieri LPERR03G02180 I 0.718
LPERR10G13190 Leersia perrieri LPERR10G13190 I 0.718
OB03G12320 Oryza brachyantha OB03G12320 I 0.718
BGIOSGA031479 Oryza indica BGIOSGA031479 I 0.718
OBART10G17270 Oryza barthii OBART10G17270 I 0.718
ORUFI03G02110 Oryza rufipogon ORUFI03G02110 I 0.718
ORGLA10G0122800 Oryza glaberrima ORGLA10G0122800 I 0.718
OPUNC03G02160 Oryza punctata OPUNC03G02160 I 0.718
GRMZM5G887276 Zea mays GRMZM5G887276 I 0.718
OGLUM03G02310 Oryza glumaepatula OGLUM03G02310 I 0.718
Pavir.Ib00180 Panicum virgatum Pavir.Ib00180 I 0.718
Bo5g019810 Brassica oleracea Bo5g019810 I 0.716
Bra026202 Brassica rapa Bra026202 I 0.716
Si019625m.g Setaria italica Si019625m.g I 0.716
AT1G14600 Arabidopsis thaliana AT1G14600 D 0.716
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I 0.716
Bostr.24340s0004 Boechera stricta Bostr.24340s0004 I 0.716
Carubv10010057m.g Capsella rubella Carubv10010057m.g I 0.716
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I 0.716
BRADI1G32370 Brachypodium distachyon BRADI1G32370 N 0.713
Cla017202 Citrullus lanatus Cla017202 I 0.713
BRADI5G18590 Brachypodium distachyon BRADI5G18590 N 0.708
mgf023762m Mimulus guttatus mgf023762m I 0.707
Sb04g032130 Sorghum bicolor Sb04g032130 I 0.707
GRMZM2G374986 Zea mays GRMZM2G374986 I 0.703
Solyc02g076670.2 Solanum lycopersicum Solyc02g076670.2 I 0.703
PGSC0003DMG400010194 Solanum tuberosum PGSC0003DMG400010194 I 0.703
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I 0.701
AMTR_s00037p00221530 Amborella trichopoda AMTR_s00037p00221530 I 0.700
SapurV1A.0015s0960 Salix purpurea SapurV1A.0015s0960 I 0.697
F775_22605 Aegilops tauschii F775_22605 I 0.696
MDP0000196504 Malus domestica MDP0000196504 I 0.696
MDP0000214282 Malus domestica MDP0000214282 I 0.696
GRMZM2G106185 Zea mays GRMZM2G106185 I 0.695
MDP0000321302 Malus domestica MDP0000321302 I 0.694
Bo2g104640 Brassica oleracea Bo2g104640 I 0.691
Carubv10003097m.g Capsella rubella Carubv10003097m.g I 0.691
Bostr.7199s0006 Boechera stricta Bostr.7199s0006 I 0.691
AT4G04605 Arabidopsis thaliana AT4G04605 I 0.691
Cagra.4137s0009 Capsella grandiflora Cagra.4137s0009 I 0.691
POPTR_0008s14140 Populus trichocarpa POPTR_0008s14140 I 0.690
TRIUR3_18893 Triticum urartu TRIUR3_18893 N 0.689
Thhalv10017090m.g Eutrema salsugineum Thhalv10017090m.g I 0.689
GRMZM2G100709 Zea mays GRMZM2G100709 N 0.687
PGSC0003DMG400004389 Solanum tuberosum PGSC0003DMG400004389 I 0.685
Solyc03g006150.2 Solanum lycopersicum Solyc03g006150.2 I 0.685
Cucsa.277160 Cucumis sativus Cucsa.277160 I 0.685
BRADI1G71910 Brachypodium distachyon BRADI1G71910 I 0.683
Ciclev10005466m.g Citrus clementina Ciclev10005466m.g I 0.682
MTR_0223s0040 Medicago truncatula MTR_0223s0040 I 0.682
Ca_05422 Cicer arietinum Ca_05422 I 0.682
Ca_14800 Cicer arietinum Ca_14800 I 0.682
GLYMA20G24290 Glycine max GLYMA20G24290 I 0.682
orange1.1g020303m.g Citrus sinensis orange1.1g020303m.g I 0.682
GLYMA20G00861 Glycine max GLYMA20G00861 I 0.682
MTR_1g112370 Medicago truncatula MTR_1g112370 I 0.682
GLYMA07G19585 Glycine max GLYMA07G19585 I 0.682
chr5.LjT14K23.60.nc Lotus japonicus chr5.LjT14K23.60.nc I 0.682
TCM_001942 Theobroma cacao TCM_001942 I 0.680
GSMUA_Achr11G01510_001 Musa acuminata GSMUA_Achr11G01510_001 I 0.679
cassava20298.m1 Manihot esculenta cassava20298.m1 I 0.679
VIT_01s0137g00050 Vitis vinifera VIT_01s0137g00050 I 0.679
cassava27240.m1 Manihot esculenta cassava27240.m1 I 0.679
GSMUA_Achr2G11010_001 Musa acuminata GSMUA_Achr2G11010_001 I 0.679
GSMUA_AchrUn_randomG06480_001 Musa acuminata GSMUA_AchrUn_randomG06480_001 I 0.679
evm.TU.supercontig_2.82 Carica papaya evm.TU.supercontig_2.82 I 0.679
SapurV1A.0203s0150 Salix purpurea SapurV1A.0203s0150 I 0.679
GSMUA_Achr5G19200_001 Musa acuminata GSMUA_Achr5G19200_001 I 0.679
POPTR_0010s10990 Populus trichocarpa POPTR_0010s10990 I 0.679
Aquca_002_01368 Aquilegia coerulea Aquca_002_01368 I 0.679
Eucgr.B02627 Eucalyptus grandis Eucgr.B02627 I 0.679
TCM_011166 Theobroma cacao TCM_011166 I 0.679
29780.m001368 Ricinus communis 29780.m001368 I 0.679
PGSC0003DMG400029440 Solanum tuberosum PGSC0003DMG400029440 I 0.679
Gorai.002G169300 Gossypium raimondii Gorai.002G169300 I 0.679
MDP0000234120 Malus domestica MDP0000234120 I 0.676
BRADI3G51410 Brachypodium distachyon BRADI3G51410 I 0.675
Ciclev10032941m.g Citrus clementina Ciclev10032941m.g I 0.673
orange1.1g029903m.g Citrus sinensis orange1.1g029903m.g I 0.673
estExt_fgenesh1_pg.C_1660037 Physcomitrella patens estExt_fgenesh1_pg.C_1660037 I 0.669
Bra026618 Brassica rapa Bra026618 I 0.667
Bostr.0556s0031 Boechera stricta Bostr.0556s0031 I 0.667
Thhalv10004791m.g Eutrema salsugineum Thhalv10004791m.g I 0.667
Carubv10017538m.g Capsella rubella Carubv10017538m.g I 0.667
fgenesh2_kg.5__121__AT2G02060.1 Arabidopsis lyrata fgenesh2_kg.5__121__AT2G02060.1 I 0.667
Cagra.0549s0004 Capsella grandiflora Cagra.0549s0004 I 0.667
AT2G02060 Arabidopsis thaliana AT2G02060 I 0.667
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I 0.665
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I 0.665
OGLUM10G17290 Oryza glumaepatula OGLUM10G17290 I 0.665
PK23854.1 Cannabis sativa PK23854.1 I 0.664
Gorai.004G233300 Gossypium raimondii Gorai.004G233300 I 0.663
Gorai.011G039000 Gossypium raimondii Gorai.011G039000 I 0.663
LjSGA_106880.1 Lotus japonicus LjSGA_106880.1 I 0.663
orange1.1g035517m.g Citrus sinensis orange1.1g035517m.g I 0.663
SapurV1A.0029s0520 Salix purpurea SapurV1A.0029s0520 I 0.663
Lus10002207.g Linum usitatissimum Lus10002207.g I 0.663
Lus10012239.g Linum usitatissimum Lus10012239.g I 0.663
OPUNC12G00380 Oryza punctata OPUNC12G00380 I 0.663
OBART11G00370 Oryza barthii OBART11G00370 I 0.663
MTR_2g084230 Medicago truncatula MTR_2g084230 I 0.663
OGLUM11G00320 Oryza glumaepatula OGLUM11G00320 I 0.663
OGLUM12G00290 Oryza glumaepatula OGLUM12G00290 I 0.663
OMERI11G00820 Oryza meridionalis OMERI11G00820 I 0.663
OMERI11G00630 Oryza meridionalis OMERI11G00630 I 0.663
GSMUA_Achr7G13880_001 Musa acuminata GSMUA_Achr7G13880_001 I 0.663
GLYMA15G08970 Glycine max GLYMA15G08970 I 0.663
BGIOSGA036796 Oryza indica BGIOSGA036796 I 0.663
BGIOSGA007064 Oryza indica BGIOSGA007064 I 0.663
BGIOSGA036807 Oryza indica BGIOSGA036807 I 0.663
Bo9g071530 Brassica oleracea Bo9g071530 I 0.663
GLYMA08G12320 Glycine max GLYMA08G12320 I 0.663
GLYMA05G29161 Glycine max GLYMA05G29161 I 0.663
Ciclev10017867m.g Citrus clementina Ciclev10017867m.g I 0.663
ONIVA02G05430 Oryza nivara ONIVA02G05430 I 0.663
OS11G0106100 Oryza sativa OS11G0106100 I 0.663
OS02G0168200 Oryza sativa OS02G0168200 I 0.663
OS12G0105600 Oryza sativa OS12G0105600 I 0.663
TCM_001726 Theobroma cacao TCM_001726 I 0.663
Ca_08598 Cicer arietinum Ca_08598 I 0.663
TCM_029684 Theobroma cacao TCM_029684 I 0.663
ONIVA11G00030 Oryza nivara ONIVA11G00030 I 0.663
ORUFI12G00420 Oryza rufipogon ORUFI12G00420 I 0.663
OPUNC11G00360 Oryza punctata OPUNC11G00360 I 0.663
OPUNC02G04370 Oryza punctata OPUNC02G04370 I 0.663
ONIVA12G00410 Oryza nivara ONIVA12G00410 I 0.663
ORUFI11G00320 Oryza rufipogon ORUFI11G00320 I 0.663
ORGLA02G0047700 Oryza glaberrima ORGLA02G0047700 I 0.663
ORUFI02G05300 Oryza rufipogon ORUFI02G05300 I 0.663
ORGLA11G0005200 Oryza glaberrima ORGLA11G0005200 I 0.663
Bra024836 Brassica rapa Bra024836 I 0.661
Bo7g080160 Brassica oleracea Bo7g080160 I 0.661